View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20237_low_11 (Length: 315)
Name: NF20237_low_11
Description: NF20237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20237_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 34550383 - 34550085
Alignment:
| Q |
1 |
ctgagatcgttgagagggttgaagtggtggaatatgaacgtgtacctgaggttaggccctatggtggtcaagtgatctacgaagaggacgtggatgttga |
100 |
Q |
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| T |
34550383 |
ctgagatcgttgagagggttgaagtggtggaatatgaacgtgtacctgaggttaggccctatggtggtcaagtgatctacgaagaggacgtggatgttga |
34550284 |
T |
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| Q |
101 |
gaccaataatcaatattacccacgaaggaccaggtcaaatggtcactcatggaacacattcaggccataagcttgtttgatggttacttaacatgcaagg |
200 |
Q |
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| T |
34550283 |
gaccaataatcaatattacccacgaaggaccaggtcaaatggtcactcatggaacacattcaggccataagcttgtttgatggttacttaacatgcaagg |
34550184 |
T |
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| Q |
201 |
caggatattttaacatataatcaccgatgtgtgtttgtattaattaaataaactcctgcttagccagccgttattatgctatataaatcgtgtatcaat |
299 |
Q |
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| T |
34550183 |
caggatatcttaacatatgatcaccgatgtgtgtttgtattaattaaataaactcctgcttagccagccgttattatgttatatgaatcgtgtatcaat |
34550085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 34547052 - 34546983
Alignment:
| Q |
11 |
tgagagggttgaagtggtggaatatgaacgtgtacctgaggttaggccctatggtggtcaagtgatctacgaa |
83 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||| ||||||| | |||||||||||||| |
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| T |
34547052 |
tgagagggttgaagtggtggagtatgaacgagtacctgaggttagg---tatggtgataaagtgatctacgaa |
34546983 |
T |
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