View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20237_low_2 (Length: 604)
Name: NF20237_low_2
Description: NF20237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20237_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 8 - 589
Target Start/End: Complemental strand, 37898874 - 37898293
Alignment:
| Q |
8 |
tgagaagaaagacacttgcagcctttctgagcagtggagtagccaagaaaaacaacaatccaatttacgcttattacaggacgttttcggacacaaccaa |
107 |
Q |
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| T |
37898874 |
tgagaagaaagacacttgcagcctttctgagcagtggagtagccaagaaaaacaacaatccaatttacgcttattacaggacgttttcggacacaaccaa |
37898775 |
T |
|
| Q |
108 |
aacctcgtagaaaggtagagtcgggtggttgtttggaaataatagtatagcaaacaatataattgagtgatgaggaaactatgttggagacttattaact |
207 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37898774 |
aacctcgtagaaaggtagagtcaggtggttgtttggaaataatagtataacaaacaatataattgagtgatgaggaaactatgttggagacttattaact |
37898675 |
T |
|
| Q |
208 |
agattggggaattcatagaggccattcagtccaagacctcatgtgaaccctgagatttgacccgacaaaaatcataatggagtccaaaacaaacaaccag |
307 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37898674 |
agattggggaattcatacaggccattcagtccaagacctcatgtgaaccctgagatttgacccgacaaaaatcataatggagtccaaaacaaacaaccag |
37898575 |
T |
|
| Q |
308 |
ttttgtgtgaattagctgaaactgatatcattccttgtagtaaaggggacatgaagaagagtagttcatttgaactaagccatcaatcttgaacaaaccc |
407 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37898574 |
ttttgtgtgaaatagctgaaactgatatcattccttgtagtaaaggggacatgaagaagagtagttcatttgaactaagccatcaatcttgaacaaaccc |
37898475 |
T |
|
| Q |
408 |
aatttattaatttggatttgaaatgcaaaatgaaatataaagaagaaagccaaacatagtagataaatactgctagcagaatgtaatgaaaattgaaatg |
507 |
Q |
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| T |
37898474 |
aatttattaatttggatttgaaatgcaaaatgaaatataaagaagaaagccaaacatagtagataaatattgctagcagaatgtaatgaaaattgaaatg |
37898375 |
T |
|
| Q |
508 |
gagatttgttgctcattagaatatcaagnnnnnnnncttcataaaactagaggccattaggtaaaggcgatatatcattctt |
589 |
Q |
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| T |
37898374 |
gagatttattgctcattagaatatcaagttttttttcttcataaaactagaggccattaggtaaaggcgatatatcattctt |
37898293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 326 - 437
Target Start/End: Complemental strand, 37896306 - 37896195
Alignment:
| Q |
326 |
aaactgatatcattccttgtagtaaaggggacatgaagaagagtagttcatttgaactaagccatcaatcttgaacaaacccaatttattaatttggatt |
425 |
Q |
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|||||||||| |||| || | ||||||||| |||||||| | || | ||||||||||||||||||| |||||||| |||||||||||||||| |||| |
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| T |
37896306 |
aaactgatatgattctttacaataaaggggatatgaagaatattaactgatttgaactaagccatcaaaattgaacaagcccaatttattaatttagatt |
37896207 |
T |
|
| Q |
426 |
tgaaatgcaaaa |
437 |
Q |
| |
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|| ||||||||| |
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| T |
37896206 |
tggaatgcaaaa |
37896195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 42447387 - 42447201
Alignment:
| Q |
72 |
ttacgcttattacaggacgttttcggacacaaccaaaacctcgtagaaaggtagagtcgggtggttgtttggaaataatagtatagcaaacaatataatt |
171 |
Q |
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||||||||| || ||| ||||| | ||||||||||||| ||||| | ||| ||||||| ||||||| |||| ||| || | |||| |||| | ||| |
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| T |
42447387 |
ttacgcttactataggccgtttacagacacaaccaaaaactcgttggaagttagagtcaggtggttatttgaaaagaacaatataaggcacaacacaata |
42447288 |
T |
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| Q |
172 |
gagtgatgaggaaactatgttgg-agacttattaactagattggggaattcatagaggccattcagtccaagacctcatgtgaaccc |
257 |
Q |
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|||| |||||||||||| |||| ||||| | || |||||||||||||||||| ||||||| |||||||||||||| | ||||||| |
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| T |
42447287 |
gagttatgaggaaactacattgggagactggtgaagtagattggggaattcatacaggccatccagtccaagacctcgtatgaaccc |
42447201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 355 - 535
Target Start/End: Complemental strand, 29141086 - 29140906
Alignment:
| Q |
355 |
gacatgaagaagagtagttcatttgaactaagccatcaatcttgaacaaacccaatttattaatttggatttgaaatgcaaaatgaaatataaagaagaa |
454 |
Q |
| |
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|||||||| ||| ||||| ||||||||||| |||||| | | ||| | ||| ||||||| | |||||||| ||| ||||| ||| ||||| ||||| |
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| T |
29141086 |
gacatgaaagagaatagttgatttgaactaactcatcaagcataaaccagaccagtttatta-tctggatttggaatacaaaagaaaaaataaacaagaa |
29140988 |
T |
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| Q |
455 |
agccaaacatagtagataa-atactgctagcagaatgtaatgaaaattgaaatggagatttgttgctcattagaatatcaag |
535 |
Q |
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| | ||||||||| || | ||| |||| | | |||||||||||| || |||| |||||||||||||||||||| ||||||| |
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| T |
29140987 |
aacaaaacatagttgaacagatattgctggtacaatgtaatgaaagttcaaatagagatttgttgctcattagattatcaag |
29140906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 456
Target Start/End: Complemental strand, 29138491 - 29138393
Alignment:
| Q |
357 |
catgaagaagagtagttcatttgaactaagccatcaatcttgaacaaacccaatttattaatttggatttgaaatgcaaaatgaaatataaagaagaaag |
456 |
Q |
| |
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||||||||||| || || | |||||||| ||| |||| |||||||| |||| ||| |||||||||| ||| |||| |||| |||||||| ||||||||| |
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| T |
29138491 |
catgaagaagattaatttagttgaactatgccgtcaagcttgaacacgcccagtttgttaatttgga-ttggaatgtaaaaggaaatatagagaagaaag |
29138393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 427
Target Start/End: Original strand, 32960137 - 32960189
Alignment:
| Q |
375 |
atttgaactaagccatcaatcttgaacaaacccaatttattaatttggatttg |
427 |
Q |
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||||||||||||||||||| |||||| | |||||||||| || ||||||||| |
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| T |
32960137 |
atttgaactaagccatcaagcttgaatgatcccaatttatgaagttggatttg |
32960189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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