View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20237_low_3 (Length: 590)
Name: NF20237_low_3
Description: NF20237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20237_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 215 - 573
Target Start/End: Original strand, 36879223 - 36879579
Alignment:
| Q |
215 |
atatgcttgttaagtttatagtgagatttaattttataataggtgttattttgttattggatgtgactggtgtttatggaacaggtctaatttgacctca |
314 |
Q |
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| T |
36879223 |
atatgcttgttaagtttatagtgagatttaattttataataggtgttattttgttattggatgtgactggtgtttatggaacaggtctaatttgacctca |
36879322 |
T |
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| Q |
315 |
atgaaaataaagatttcaataggttaatttttcagatttgannnnnnnnaaaaaggtcatagaaattttattttaatgatagaattaagatccaactggt |
414 |
Q |
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| T |
36879323 |
atgaaaataaagatttcaataggttaatttttcagatttgattttttaaaaaaaggtcatagaaattttattttaatgatagaattaagatccaactggt |
36879422 |
T |
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| Q |
415 |
gtaaatgaatggttgactcaaaattaagatacaacctatatagtctggtcagtttggagccaatgccattttgaaaacaataccgtggtagacgtcattg |
514 |
Q |
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| T |
36879423 |
gtaaatgaatggttgactcaaaattaagatacaacctata--gtctggtcagtttggagccaatgccattttgaaaacaataccgtggtagacgtcattg |
36879520 |
T |
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| Q |
515 |
agcaaactgatgctaattaatgagttggttggccttgagggtgaatgatatttgtggag |
573 |
Q |
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| T |
36879521 |
agcaaactgatgctaattaatgagttggttggccttgagggtgaatgatatttgtggag |
36879579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 36879015 - 36879172
Alignment:
| Q |
1 |
ctacacaacagaagaaccggtcatggtcatggtcttgtttcatcatttaaattcttgtttagctagagaactgagttcaacgctgcaatgaattttgaga |
100 |
Q |
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| T |
36879015 |
ctacacaacagaagaaccggtcatggtcatggtcttgtttcatcatttaaattcttgtttagctagaaaactgagttcaacgctgcaatgaattttgaga |
36879114 |
T |
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| Q |
101 |
aaatgacatgtaccaataaaaagggtgaatacacatttaaggaaaagtgaattgctaa |
158 |
Q |
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| T |
36879115 |
aaatgacatgtgccaataaaaagggtgaatacacatttaaggaaaagtgaattgctaa |
36879172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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