View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20237_low_4 (Length: 578)
Name: NF20237_low_4
Description: NF20237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20237_low_4 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 578
Target Start/End: Original strand, 7194145 - 7194723
Alignment:
| Q |
1 |
taatttaatttgtagtataattttcagtgtctttatgtttcctaattatttctatctactcaattattattactactacttatttttgtgtaaacccttt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7194145 |
taatttaatttgtagtatgattttcagtgtctttatgtttcctaattatttccatctactcaattattattactact---tatttttgtgtaaacccttt |
7194241 |
T |
|
| Q |
101 |
agttctcaatagaaagagttattcataatcgaaactagaggtaagtaaagtcgactaagattcaaatcctgttaaactattataattattatgtacaata |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||||||||| |
|
|
| T |
7194242 |
agttctcaatagaaagaggtattcataatcgaaactagaggtaagtaaagtcgactaagattcaaacccggttaa-ctattataactattatgtacaata |
7194340 |
T |
|
| Q |
201 |
gtattaattttttgttacaaccgcacacttataacaatttacaatggatatgccaataataacttgatgaattttctgtttgcatcttgattttagtttg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7194341 |
gtattaattttttgttacaaccgcacacttataacaatttacaatggatatgccaataataacgtgatgaattttctgtttgcatcttgattttagtttg |
7194440 |
T |
|
| Q |
301 |
acattatcgattttcatacataaatttttcac-ttgcgtgaatggagcacttcattggatcaatagacaattatcaaaacacaaaacttcttttctcatc |
399 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7194441 |
acattatcgattttcatacataattttttcactttgcgtgaatggagcacttcattggatcaatagacaattatcaaaacacggaacttcttttctcatc |
7194540 |
T |
|
| Q |
400 |
actacatgtgttaacttgg-aaaaaataca---nnnnnnngtcttctaaataagtaaacctnnnnnnnntatccaatctgaaataaacttttagatgggt |
495 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7194541 |
actacatgtgttaacttggaaaaaaatacattttttttttatcttctaaataagtaaacctaaaaaaaatatccaatctgaaataaacttttagatgggt |
7194640 |
T |
|
| Q |
496 |
gtggtttttaagaaattaagggggtaaaatagcttcccaaagctaaccgaaatggaagatcaattccataggggattttcttt |
578 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7194641 |
gtggtttttaagaaattaagggggtaaaatagcttcccaaagctaaccgaaatcgaagatcaattccataggggattttcttt |
7194723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 363
Target Start/End: Complemental strand, 11373177 - 11373145
Alignment:
| Q |
331 |
acttgcgtgaatggagcacttcattggatcaat |
363 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
11373177 |
acttgtgtgaatggagcacttcattggatcaat |
11373145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University