View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20237_low_5 (Length: 445)
Name: NF20237_low_5
Description: NF20237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20237_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 22 - 428
Target Start/End: Complemental strand, 32385976 - 32385570
Alignment:
| Q |
22 |
agcaaaatgacggtagtggaagattgaacactacgcaggatcaaaccaaaccaaaccaaaggcaatgtacaacttgtattaggataatattaactaagta |
121 |
Q |
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| T |
32385976 |
agcaaaatgactgtagtggaagattgaacactacgcaggatcaaaccaaaccaaaccaaaggcaatgtacaacttgtattaggatagtatcaactaagta |
32385877 |
T |
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| Q |
122 |
agacagtctttaaaaaatgatgatatcaatcacaacaatatcatataatatagaatatagtatatgcactaaagtaatcgcaaattttgcatccatatgg |
221 |
Q |
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| T |
32385876 |
agacagtctttaaaaaatgatgatatcaattacaacaatatcatataatatagaatatagtatatgcactaaagttatcgcaaattttgcatccatatgg |
32385777 |
T |
|
| Q |
222 |
ctccaatcaatggtaaccatcaaattattacaaacatttgaatttaatcacaattaaattacttctaaagtgacgcagataaatcaatagaaaaacgaag |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32385776 |
ctccaatcaatggtaaccatcaaattattacaaacatttgaatttaatcacaattaaattacttctaaagtgacgcagataaatcaatagaaaaacgaag |
32385677 |
T |
|
| Q |
322 |
ttttaaattcacaaatggttaccttgggtcgtgaatcagtaagaaatcctaacaaaagattgaacaaagtcgacacatcagaccaatgaacactatccct |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32385676 |
ttttaaattcacaaatggttaccttgggtcgtgaatcagtaagaaatcctaacaaaagattgaacaaagtcgacacatcagaccaatgaacactatccct |
32385577 |
T |
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| Q |
422 |
atgaatc |
428 |
Q |
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| T |
32385576 |
atgaatc |
32385570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 326 - 428
Target Start/End: Original strand, 32408245 - 32408347
Alignment:
| Q |
326 |
aaattcacaaatggttaccttgggtcgtgaatcagtaagaaatcctaacaaaagattgaacaaagtcgacacatcagaccaatgaacactatccctatga |
425 |
Q |
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|||||||| ||| |||||||| ||| |||||||||||||| |||||||| | ||||||||| || || |||||||||||||||||||||||||||||| |
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| T |
32408245 |
aaattcacgaattgttaccttcagtctcgaatcagtaagaaaacctaacaagaaattgaacaatgttgatacatcagaccaatgaacactatccctatga |
32408344 |
T |
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| Q |
426 |
atc |
428 |
Q |
| |
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||| |
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| T |
32408345 |
atc |
32408347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 375 - 428
Target Start/End: Complemental strand, 50261619 - 50261566
Alignment:
| Q |
375 |
aaaagattgaacaaagtcgacacatcagaccaatgaacactatccctatgaatc |
428 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
50261619 |
aaaagattgaacaacgtggacacatcagaccaatgaacactatccctatgaatc |
50261566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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