View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20237_low_8 (Length: 371)

Name: NF20237_low_8
Description: NF20237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20237_low_8
NF20237_low_8
[»] chr2 (8 HSPs)
chr2 (2-193)||(18701316-18701507)
chr2 (227-327)||(18701845-18701945)
chr2 (214-304)||(8257253-8257343)
chr2 (214-283)||(22265782-22265851)
chr2 (224-308)||(32810007-32810091)
chr2 (224-304)||(33500100-33500180)
chr2 (214-304)||(37807238-37807328)
chr2 (252-304)||(42491832-42491884)
[»] chr6 (6 HSPs)
chr6 (214-315)||(31238322-31238423)
chr6 (214-305)||(31247692-31247783)
chr6 (212-304)||(2418263-2418355)
chr6 (214-308)||(8307907-8307999)
chr6 (246-304)||(2660345-2660403)
chr6 (222-308)||(9062874-9062960)
[»] chr7 (6 HSPs)
chr7 (214-297)||(24685755-24685838)
chr7 (219-313)||(29997362-29997456)
chr7 (246-308)||(47639524-47639586)
chr7 (204-304)||(41750469-41750569)
chr7 (212-313)||(41750666-41750767)
chr7 (250-304)||(31211903-31211957)
[»] chr3 (5 HSPs)
chr3 (212-301)||(39908848-39908937)
chr3 (214-307)||(51672509-51672602)
chr3 (214-307)||(52201300-52201390)
chr3 (259-308)||(48861240-48861289)
chr3 (216-304)||(8557582-8557670)
[»] chr5 (3 HSPs)
chr5 (245-308)||(4828897-4828960)
chr5 (214-305)||(32565945-32566036)
chr5 (253-302)||(26362481-26362530)
[»] chr1 (5 HSPs)
chr1 (213-308)||(5302382-5302477)
chr1 (214-304)||(1267072-1267162)
chr1 (214-308)||(14321043-14321137)
chr1 (220-304)||(24902267-24902351)
chr1 (208-304)||(48982862-48982958)
[»] chr4 (7 HSPs)
chr4 (246-307)||(35803526-35803587)
chr4 (220-308)||(49767568-49767656)
chr4 (214-308)||(32004413-32004507)
chr4 (214-308)||(46737247-46737341)
chr4 (214-308)||(53920214-53920308)
chr4 (214-315)||(55292297-55292398)
chr4 (240-304)||(53599357-53599421)
[»] chr8 (3 HSPs)
chr8 (212-288)||(4305368-4305444)
chr8 (252-304)||(7671728-7671780)
chr8 (220-288)||(43623571-43623639)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 18701316 - 18701507
Alignment:
Q  2 caaattattgctttgaatgatcgaacacataagaagatagttgtctaatctaaatcatgctgatgaatttggaaaaatgattaggaattaggccatatgt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18701316 caaattattgctttgaatgatcgaacacataagaagatagttgtctaatctaaattatgctgatgaatttggaaaaatgattaggaattaggccatatgt 18701415  T
Q  102 atttgtcatcttcggataacagtcagagccacagagcggtggtgacttgccaatggtatttatggttgtaacagtacattttttatgttaca 193  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||| | ||||||||||||||||||||| |||||| |||||||||||    
T  18701416 atttgtcatcttcggataacagtcagcgccacagagcggtgttgacttgtccatggtatttatggttgtaacaatacattgtttatgttaca 18701507  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 227 - 327
Target Start/End: Original strand, 18701845 - 18701945
Alignment:
Q  227 tatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaatgaaagaattctcttaacatgac 326  Q
    |||||||| |||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||    
T  18701845 tatataaatttagcattggaaattgatgaaaagtaaaatattctactttataaaagttaaaatgttattgtttttaataaaagaattctcttaacacgac 18701944  T
Q  327 c 327  Q
    |    
T  18701945 c 18701945  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 304
Target Start/End: Complemental strand, 8257343 - 8257253
Alignment:
Q  214 ttaaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaat 304  Q
    ||||||||||||||||| ||| || ||||| | || ||||||||| || ||| |||||||||| |||||| |||| |||||||| ||||||    
T  8257343 ttaaggagattaatatagaaactttgcattgggaaatgatgaaaaatggaatgttccactttagaaaagtcaaaaagttgttgtctttaat 8257253  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 283
Target Start/End: Complemental strand, 22265851 - 22265782
Alignment:
Q  214 ttaaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagt 283  Q
    ||||||||||||||||  ||| || | |||||||| |||||||||||||||| |||||||||| ||||||    
T  22265851 ttaaggagattaatatgaaaactttggattagaaaatgatgaaaagtgaaatgttccactttagaaaagt 22265782  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 308
Target Start/End: Original strand, 32810007 - 32810091
Alignment:
Q  224 taatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaatgaaa 308  Q
    ||||||| ||| || ||||| | || || |||||||| |||| ||| ||||||||||||| ||||||||||||||||| ||||||    
T  32810007 taatatagaaactttgcattgggaagtggtgaaaagtaaaatgttcaactttataaaagtcaaaatgttgttgttttttatgaaa 32810091  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 304
Target Start/End: Complemental strand, 33500180 - 33500100
Alignment:
Q  224 taatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaat 304  Q
    ||||||| ||| || | |||||||| |||||||||||| ||| || ||| ||||||||||||||| ||||| |||||||||    
T  33500180 taatatagaaattttgtattagaaagtgatgaaaagtggaatgtttcaccttataaaagttaaaaagttgtcgtttttaat 33500100  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 304
Target Start/End: Original strand, 37807238 - 37807328
Alignment:
Q  214 ttaaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaat 304  Q
    ||||| ||||||||||| ||| |  |||||| |||||| |||||| |||||| ||  ||||||| ||||| |||| | |||||||||||||    
T  37807238 ttaagaagattaatatagaaattatgcattacaaattggtgaaaaatgaaatgtttaactttatgaaagtcaaaaaggtgttgtttttaat 37807328  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 42491884 - 42491832
Alignment:
Q  252 atgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaat 304  Q
    |||||||||||||| ||||| | ||| |||||||||| ||| |||||||||||    
T  42491884 atgaaaagtgaaattttccattatatgaaagttaaaaagtttttgtttttaat 42491832  T

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Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 214 - 315
Target Start/End: Original strand, 31238322 - 31238423
Alignment:
Q  214 ttaaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaatgaaagaatt 313  Q
    |||| |||| ||||||| ||| || ||||| |||| |||||||||||||||| ||||||||||||||||| |||| |||||||||||||||| || ||||    
T  31238322 ttaacgagactaatatagaaattttgcattggaaaatgatgaaaagtgaaatgttccactttataaaagtcaaaaagttgttgtttttaatggaaaaatt 31238421  T
Q  314 ct 315  Q
    ||    
T  31238422 ct 31238423  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 305
Target Start/End: Original strand, 31247692 - 31247783
Alignment:
Q  214 ttaaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaatg 305  Q
    |||| |||| ||||||| ||| || ||||| |||| |||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||    
T  31247692 ttaacgagactaatatagaaattttgcattggaaaatgatgaaaagtgaaatgttccactttataaaagtcaaaaagttgttgtttttaatg 31247783  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 212 - 304
Target Start/End: Original strand, 2418263 - 2418355
Alignment:
Q  212 aattaaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaat 304  Q
    |||||||||| |||||||  ||| || ||||| | || |||||||||||||||| |||||||||| |||| | ||||  ||||||||||||||    
T  2418263 aattaaggaggttaatatgaaaactttgcattgggaaatgatgaaaagtgaaattttccactttagaaaaatcaaaaaattgttgtttttaat 2418355  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 308
Target Start/End: Original strand, 8307907 - 8307999
Alignment:
Q  214 ttaaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaatgaaa 308  Q
    ||||||||||||||||| ||| |  ||||| ||||||||||||||||| ||| ||  | ||||||||||| |||  ||||||||||| |||||||    
T  8307907 ttaaggagattaatatagaaattatgcattggaaattgatgaaaagtggaatgtttgattttataaaagtcaaa--gttgttgttttaaatgaaa 8307999  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 2660345 - 2660403
Alignment:
Q  246 aaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaat 304  Q
    |||||||||||||||  ||  || ||||||||||||||||||| |||||||||||||||    
T  2660345 aaattgatgaaaagtagaacgtttcactttataaaagttaaaaagttgttgtttttaat 2660403  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 308
Target Start/End: Complemental strand, 9062960 - 9062874
Alignment:
Q  222 attaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaatgaaa 308  Q
    ||||||||| ||| |  ||||| ||||||| ||||||||  ||| ||  ||||||| |||| ||||| |||||||||||||||||||    
T  9062960 attaatatagaaattatgcattggaaattggtgaaaagttgaatgtttaactttatgaaagataaaaagttgttgtttttaatgaaa 9062874  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 297
Target Start/End: Original strand, 24685755 - 24685838
Alignment:
Q  214 ttaaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgt 297  Q
    |||||| |||||||||| ||| || ||||| |||| |||||||||||| |||||||||||||| |||||| |||| ||||||||    
T  24685755 ttaaggtgattaatatagaaactttgcattggaaaatgatgaaaagtggaatattccactttagaaaagtcaaaaagttgttgt 24685838  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 29997362 - 29997456
Alignment:
Q  219 gagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaatgaaagaatt 313  Q
    |||||||||||  ||| || |||||  ||| | |||||||||| ||| |||||||||| ||||||||||| |||||||| |||||| ||||||||    
T  29997362 gagattaatatggaaactttgcattgaaaaataatgaaaagtggaatgttccactttaaaaaagttaaaaagttgttgtctttaataaaagaatt 29997456  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 308
Target Start/End: Original strand, 47639524 - 47639586
Alignment:
Q  246 aaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaatgaaa 308  Q
    ||||||||||||| |||||| ||  ||||||||||||| |||| |||||||||||||||||||    
T  47639524 aaattgatgaaaaatgaaatgtttaactttataaaagtcaaaaagttgttgtttttaatgaaa 47639586  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 204 - 304
Target Start/End: Complemental strand, 41750569 - 41750469
Alignment:
Q  204 agggcatcaattaaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaa 303  Q
    ||||||| | |||||||||||||||   ||| || ||||||  || |||||||||||| | | ||||||| ||||||||| |||| ||||||||||||||    
T  41750569 agggcattagttaaggagattaataagaaaactttgcattaagaaatgatgaaaagtggagtgttccactgtataaaagtcaaaaagttgttgtttttaa 41750470  T
Q  304 t 304  Q
    |    
T  41750469 t 41750469  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 313
Target Start/End: Complemental strand, 41750767 - 41750666
Alignment:
Q  212 aattaaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaatgaaagaa 311  Q
    ||||||||||||||||||  |||||| |||||  ||| |||||||||||| ||| || ||||||| |||||| ||||  || |||| |||||| ||| ||    
T  41750767 aattaaggagattaatatggaaaatttgcattgaaaaatgatgaaaagtggaatgtttcactttagaaaagtcaaaaaattattgtctttaataaaaaaa 41750668  T
Q  312 tt 313  Q
    ||    
T  41750667 tt 41750666  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 31211957 - 31211903
Alignment:
Q  250 tgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaat 304  Q
    |||||||||||| ||| |||||||| |||||||| |||| |||||||| ||||||    
T  31211957 tgatgaaaagtggaatgttccacttcataaaagtcaaaaagttgttgtctttaat 31211903  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 212 - 301
Target Start/End: Complemental strand, 39908937 - 39908848
Alignment:
Q  212 aattaaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgttttt 301  Q
    ||||||||||||||||||  ||| || ||||| |||| |||||||||||| |||  || |||||| ||||||||||| ||||||||||||    
T  39908937 aattaaggagattaatatggaaactttgcattggaaaatgatgaaaagtggaattatctactttaaaaaagttaaaaagttgttgttttt 39908848  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 307
Target Start/End: Original strand, 51672509 - 51672602
Alignment:
Q  214 ttaaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaatgaa 307  Q
    ||||| ||||||||||| ||| |  ||||||||||||| |||||| |||||| ||  ||||||| |||||||||| | |||||||| |||||||    
T  51672509 ttaagaagattaatatagaaattatgcattagaaattggtgaaaaatgaaatgtttaactttattaaagttaaaaagctgttgtttataatgaa 51672602  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 307
Target Start/End: Original strand, 52201300 - 52201390
Alignment:
Q  214 ttaaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaatgaa 307  Q
    ||||| ||||||||||||||| || | ||||||||||| | ||||||||||| ||  |||||   ||||| |||| ||||||||||||||||||    
T  52201300 ttaagaagattaatatataaattttggattagaaattggtaaaaagtgaaatgtttaacttt---aaagtcaaaaagttgttgtttttaatgaa 52201390  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 48861240 - 48861289
Alignment:
Q  259 gtgaaatattccactttataaaagttaaaatgttgttgtttttaatgaaa 308  Q
    ||||||||||  ||||||||||||| ||||  ||||||||||||||||||    
T  48861240 gtgaaatatttaactttataaaagtcaaaaaattgttgtttttaatgaaa 48861289  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 304
Target Start/End: Original strand, 8557582 - 8557670
Alignment:
Q  216 aaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaat 304  Q
    ||||||||||||||  ||| || ||||| | || |||||||||||| ||| || ||||||| |||||| || | |||||||| ||||||    
T  8557582 aaggagattaatatggaaactttgcattgggaaatgatgaaaagtggaatgtttcactttagaaaagtcaataagttgttgtctttaat 8557670  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 4828960 - 4828897
Alignment:
Q  245 gaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaatgaaa 308  Q
    ||||||| ||||||||  ||||||  ||||||| |||||||||| |||||||||||||||||||    
T  4828960 gaaattgttgaaaagtagaatatttaactttatgaaagttaaaaggttgttgtttttaatgaaa 4828897  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 305
Target Start/End: Complemental strand, 32566036 - 32565945
Alignment:
Q  214 ttaaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaatg 305  Q
    ||||||||| ||||||| ||| ||  |||| |||| |||||||||||| ||||||| | ||||||||||| ||||  || ||||||||||||    
T  32566036 ttaaggagactaatataaaaattttacattggaaagtgatgaaaagtggaatattcgagtttataaaagtcaaaagtttattgtttttaatg 32565945  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 26362481 - 26362530
Alignment:
Q  253 tgaaaagtgaaatattccactttataaaagttaaaatgttgttgttttta 302  Q
    |||||||| |||||||| ||||||| ||||| |||| |||||||||||||    
T  26362481 tgaaaagtaaaatattcaactttatgaaagtcaaaaagttgttgttttta 26362530  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 308
Target Start/End: Complemental strand, 5302477 - 5302382
Alignment:
Q  213 attaaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaatgaaa 308  Q
    |||||| ||||||||| ||| | |  ||||| ||||| | |||||| |||||||||  ||||||| ||||||||||  ||||||||||||||||||    
T  5302477 attaagaagattaatacatagattatgcattggaaatcggtgaaaaatgaaatatttaactttatgaaagttaaaaaattgttgtttttaatgaaa 5302382  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 304
Target Start/End: Original strand, 1267072 - 1267162
Alignment:
Q  214 ttaaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaat 304  Q
    ||||||||||||||||  ||| ||  |||| |||| ||| |||||||| ||| |||||||||| |||||| |||| |||||||| ||||||    
T  1267072 ttaaggagattaatatggaaattttacattggaaagtgaagaaaagtggaatgttccactttagaaaagtcaaaaagttgttgtctttaat 1267162  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 308
Target Start/End: Complemental strand, 14321137 - 14321043
Alignment:
Q  214 ttaaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaatgaaa 308  Q
    ||||| ||||||||||| ||| |  |||||  ||||||||||||||| |||| ||  | ||||| ||||| |||| |||||||||||||||||||    
T  14321137 ttaagaagattaatatagaaattatgcattgaaaattgatgaaaagtaaaatgtttaattttatgaaagtaaaaaagttgttgtttttaatgaaa 14321043  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 304
Target Start/End: Complemental strand, 24902351 - 24902267
Alignment:
Q  220 agattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaat 304  Q
    ||||||||||| ||| ||  ||||||||| || ||||||||| || ||| || || || ||||| |||| |||||||||||||||    
T  24902351 agattaatatagaaattttacattagaaagtggtgaaaagtggaacatttcagttcatgaaagtcaaaaggttgttgtttttaat 24902267  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 304
Target Start/End: Complemental strand, 48982958 - 48982862
Alignment:
Q  208 catcaattaaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaat 304  Q
    |||||| ||| |||||||||||| ||| ||  ||||| ||| |||||||||||  ||| || |  ||||||||||| |||| ||| |||||||||||    
T  48982958 catcaactaaagagattaatatagaaattttacattaaaaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgtttttaat 48982862  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 35803587 - 35803526
Alignment:
Q  246 aaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaatgaa 307  Q
    |||||| | ||||||||||||||  |||||||||| |||||||  |||||||||||||||||    
T  35803587 aaattggtaaaaagtgaaatatttaactttataaacgttaaaaaattgttgtttttaatgaa 35803526  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 49767568 - 49767656
Alignment:
Q  220 agattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaatgaaa 308  Q
    |||| |||||| ||| | ||||||  |||||||||||||||||||| ||  |||||||||||||| |||  || || ||||||||||||    
T  49767568 agataaatataaaaattcagcattgaaaattgatgaaaagtgaaatgtttaactttataaaagtttaaaaattattatttttaatgaaa 49767656  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 308
Target Start/End: Original strand, 32004413 - 32004507
Alignment:
Q  214 ttaaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaatgaaa 308  Q
    ||||| ||||||||||| ||| |  |||||  ||||||  |||||||| ||| ||  ||||||| ||||| |||| |||||||||||||||||||    
T  32004413 ttaagaagattaatatagaaattatgcatttaaaattggggaaaagtggaatgtttaactttatgaaagtcaaaaagttgttgtttttaatgaaa 32004507  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 308
Target Start/End: Original strand, 46737247 - 46737341
Alignment:
Q  214 ttaaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaatgaaa 308  Q
    ||||| |||| |||||| ||| |  ||||| ||||||||||||||||| ||| ||  ||||||| ||| | |||| ||| |||||||||||||||    
T  46737247 ttaagaagataaatatagaaattctgcattggaaattgatgaaaagtggaatgtttaactttatgaaaatcaaaaagttattgtttttaatgaaa 46737341  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 308
Target Start/End: Complemental strand, 53920308 - 53920214
Alignment:
Q  214 ttaaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaatgaaa 308  Q
    ||||||||||||||||  ||| ||  |||| |||| | |||| ||||| ||| || ||||||| |||||| |||| |||||||| ||||||||||    
T  53920308 ttaaggagattaatatgaaaactttacattggaaaataatgagaagtggaatgtttcactttagaaaagtcaaaaagttgttgtctttaatgaaa 53920214  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 315
Target Start/End: Complemental strand, 55292398 - 55292297
Alignment:
Q  214 ttaaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaatgaaagaatt 313  Q
    ||||| ||||||||||| ||| |  | |||| |||||| |||||| |||||| ||  | ||||| ||| | |||| ||||||||||||||||||| ||||    
T  55292398 ttaagaagattaatatagaaattatgtattaaaaattggtgaaaactgaaatgtttaattttatgaaaatcaaaaagttgttgtttttaatgaaaaaatt 55292299  T
Q  314 ct 315  Q
    ||    
T  55292298 ct 55292297  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 53599357 - 53599421
Alignment:
Q  240 cattagaaattgatgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaat 304  Q
    ||||||||||||||||||| || ||| ||  ||||||| ||||| |||| ||| |||||||||||    
T  53599357 cattagaaattgatgaaaaatgtaatgtttaactttatgaaagtaaaaaagttattgtttttaat 53599421  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 288
Target Start/End: Complemental strand, 4305444 - 4305368
Alignment:
Q  212 aattaaggagattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaa 288  Q
    |||||| |||||||||||| ||| ||  ||||||||| ||||||||||| |||| ||| ||||||| ||||| ||||    
T  4305444 aattaaagagattaatataaaaattttacattagaaaatgatgaaaagtaaaatgttctactttatgaaagtaaaaa 4305368  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 7671728 - 7671780
Alignment:
Q  252 atgaaaagtgaaatattccactttataaaagttaaaatgttgttgtttttaat 304  Q
    ||||||||| |||| ||||| |||| |||||| |||| |||||||||||||||    
T  7671728 atgaaaagtaaaatgttccattttaaaaaagtcaaaaagttgttgtttttaat 7671780  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 43623639 - 43623571
Alignment:
Q  220 agattaatatataaaattagcattagaaattgatgaaaagtgaaatattccactttataaaagttaaaa 288  Q
    ||||||||||| ||| ||  ||||| ||| ||||||||||| |||||||| |||||| |||||| ||||    
T  43623639 agattaatataaaaactttacattaaaaaatgatgaaaagtaaaatattctactttaaaaaagtcaaaa 43623571  T

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