View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20238_high_1 (Length: 815)
Name: NF20238_high_1
Description: NF20238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20238_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 217 - 799
Target Start/End: Original strand, 17352968 - 17353559
Alignment:
| Q |
217 |
aaataccagatggaaaatattactagataattcatgactacgtactatgttcatacaatttaacaagattcttatataatttcatatacgtggaagtctc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17352968 |
aaataccagatggaaaatattactagataattcatgactacgtactatgttcatacaatttaacaagattcttatataatttcatatacgtggaagtctc |
17353067 |
T |
|
| Q |
317 |
aatccaagtcacatgaaaattgagaatattgatctatcattgcaagtcctaatcccaaaaataaataaaaatccaaggaaacaaacacaacatccctgcc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
17353068 |
aatccaagtcacatgaaaattgagaatattgatctatcattgcaagtcctaatcccaaaaataaataaaaatccaaggaatcaaacacaacgtccctgcc |
17353167 |
T |
|
| Q |
417 |
accattatacataagacatacataactatatttacatttatctaaccaattcattttgttgaaaaacattctggaatat---------nnnnnnnnnttg |
507 |
Q |
| |
|
||||||||||| | ||||||||||| || |||||||||||||| |||||||||||||||||||||||||| || ||||| ||| |
|
|
| T |
17353168 |
accattatacaaatgacatacataattagatttacatttatctgaccaattcattttgttgaaaaacattttgaaatatggaatatcaaaaaaaaaattg |
17353267 |
T |
|
| Q |
508 |
tgtcggatccatgcttcaatgatgcatcagacatcgtttcattaccatatcagattcccttcctagctcattaagataatttatgttttgtatgaatgta |
607 |
Q |
| |
|
|| ||||||| ||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
17353268 |
tgccggatccttgcttcaatgatgcagcaaacatcatttcattatcatatcagattcccttcctagctcattaagataatttatgttctgtctgaatgta |
17353367 |
T |
|
| Q |
608 |
attcttttctttcaactcttatcatgtcattttgtagttttcgaaaatccattccaccaagtaattcatcaaaatgttagtattattaaatctcatgcnn |
707 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17353368 |
attcttttgtttcaactcttatcatgtcattttgtagttttcgaaaatctattccaccaagtaattcatcaaaatgttagtattattaaatctcatgcaa |
17353467 |
T |
|
| Q |
708 |
nnnnnccaaattgtactcaacacaaggatatgcaaattacattcagtcctcacaaaataatctcaatctcctaattacagtcatgcaacaaa |
799 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17353468 |
aaaaatcatatggtactcaacacaaggatatgcaaattacattcagtcctcacaaaataatctcaatctcctaatttcagtcatgcaacaaa |
17353559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 17352724 - 17352929
Alignment:
| Q |
10 |
ataggttataacaattcaaaaattgatctgaatcattaaaagaaaaacgtaggaagaatatgaattatgaagttttattagatctaaaaccgtcaattcc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
17352724 |
ataggttataacaattcaaaaattgatctgaatcattaaaagaaaaacataggaagaatatgaattatgaagttttattagatctgaaaccgtaaattcc |
17352823 |
T |
|
| Q |
110 |
aataggaaagaaaggtggtatgatttatattaaatgacataaactataacaggtccaccacatcaacaaaggataatagaagcaataaccagtgaatata |
209 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17352824 |
aataggaaagaaaggcggtatgatttatattaaatgacataaactataacaggtccaccacatcaacaatggataatagaagcaataaccagtgaatata |
17352923 |
T |
|
| Q |
210 |
gcttca |
215 |
Q |
| |
|
|||||| |
|
|
| T |
17352924 |
gcttca |
17352929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University