View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20238_high_3 (Length: 357)
Name: NF20238_high_3
Description: NF20238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20238_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 43 - 342
Target Start/End: Original strand, 28029497 - 28029796
Alignment:
| Q |
43 |
aatcacatgtatcataagatactgataaccatagttgtaacacattttcagagttaaatttgtgtttgtgtaaa------acctagaaagctatgaaaaa |
136 |
Q |
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| T |
28029497 |
aatcacatgtatcataagatactgataaccataactgtaacacattttcagagttaaatttgtgtttgtgtaaatgtaaaaccttgaagcttatggaaaa |
28029596 |
T |
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| Q |
137 |
ccagaaattagtaaaatgaattcttaataaattatggtccagacatatatacaatccattatccatatttgaaagatgcatacaaagttacaaaggctcc |
236 |
Q |
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||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
28029597 |
ccacaa-ttagtaaaatgaattcttaataaattatggtccagacatatatacaatccattatccatattt-----atgcatacaaagttacaaaggatcc |
28029690 |
T |
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| Q |
237 |
caattcaaaattctggataagaattaagataaggtttaaaatagcataagtggaacttctaaaggataatattgaaaattggcaatgtacatattgacac |
336 |
Q |
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| T |
28029691 |
caattcaaaattctgcataagaattaagataaggtttaaaatagcataagtggaacttctaaaggataatattgaaaattggcaatgtacatattgacac |
28029790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 74
Target Start/End: Complemental strand, 30035365 - 30035336
Alignment:
| Q |
45 |
tcacatgtatcataagatactgataaccat |
74 |
Q |
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| T |
30035365 |
tcacatgtatcataagatactgataaccat |
30035336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 74
Target Start/End: Original strand, 10582428 - 10582457
Alignment:
| Q |
45 |
tcacatgtatcataagatactgataaccat |
74 |
Q |
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| T |
10582428 |
tcacatgtatcataagatactgataaccat |
10582457 |
T |
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