View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20238_high_7 (Length: 251)

Name: NF20238_high_7
Description: NF20238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20238_high_7
NF20238_high_7
[»] chr1 (3 HSPs)
chr1 (10-251)||(28029192-28029432)
chr1 (138-199)||(6430687-6430748)
chr1 (162-203)||(36826682-36826723)
[»] chr6 (3 HSPs)
chr6 (162-215)||(5964181-5964234)
chr6 (162-214)||(7747070-7747122)
chr6 (175-211)||(7379739-7379775)
[»] chr8 (1 HSPs)
chr8 (165-213)||(2578083-2578131)
[»] chr4 (4 HSPs)
chr4 (162-211)||(24188204-24188253)
chr4 (138-212)||(19454177-19454251)
chr4 (150-203)||(5912779-5912832)
chr4 (162-199)||(7295702-7295739)
[»] chr5 (1 HSPs)
chr5 (162-200)||(32117874-32117912)
[»] chr7 (1 HSPs)
chr7 (173-213)||(20553804-20553844)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 28029192 - 28029432
Alignment:
Q  10 tgagatgaataactagtacaccaggcggtgactgtaggcgcaacttgttcccggagcatcaaaactgcaggtttatgaacataagcattataaccattgt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||    
T  28029192 tgagatgaataactagtacaccaggcggtgactgtaggcgcaacttgttcccggagcatcaaaactgcaggtttatgaatataagcattgtaaccatggt 28029291  T
Q  110 tattaaaacgagattcaaataacagaaaacctattctccaaatcgtgaaacaaatcttatcatgaattgtaagatacattaccaataaaaatataacatt 209  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28029292 tattaaaacgagattcaaataacagaaaacctattcaccaaatcgtgaaacaaatcttatcatgaattgtaagatacattaccaataaaaatataacatt 28029391  T
Q  210 ttaagtnnnnnnntatagatgtgccagaaaaatttgagcgga 251  Q
    ||||||       |||| ||||||||||||||||||||||||    
T  28029392 ttaagt-aaaaaatataaatgtgccagaaaaatttgagcgga 28029432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 6430748 - 6430687
Alignment:
Q  138 acctattctccaaatcgtgaaacaaatcttatcatgaattgtaagatacattaccaataaaa 199  Q
    ||||||| |||||||  |||| |||||||||| ||||||  |||||||||||| ||||||||    
T  6430748 acctattttccaaatgatgaatcaaatcttattatgaatcataagatacattagcaataaaa 6430687  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 36826723 - 36826682
Alignment:
Q  162 aatcttatcatgaattgtaagatacattaccaataaaaatat 203  Q
    |||||||| ||||||| ||||||||||||| |||||||||||    
T  36826723 aatcttattatgaattataagatacattactaataaaaatat 36826682  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 5964181 - 5964234
Alignment:
Q  162 aatcttatcatgaattgtaagatacattaccaataaaaatataacattttaagt 215  Q
    |||||||| || ||||||||||||||||| |||||||||||| |||||||||||    
T  5964181 aatcttattattaattgtaagatacattagcaataaaaatatgacattttaagt 5964234  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 7747070 - 7747122
Alignment:
Q  162 aatcttatcatgaattgtaagatacattaccaataaaaatataacattttaag 214  Q
    |||||||  |||||| ||||||||||||| |||||||||||| ||||||||||    
T  7747070 aatcttactatgaatcgtaagatacattatcaataaaaatatgacattttaag 7747122  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 7379775 - 7379739
Alignment:
Q  175 attgtaagatacattaccaataaaaatataacatttt 211  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  7379775 attgtaagatacattaccaataaaattatgacatttt 7379739  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 2578131 - 2578083
Alignment:
Q  165 cttatcatgaattgtaagatacattaccaataaaaatataacattttaa 213  Q
    ||||| |||||| |||||||||||||||||||||||||| |||||||||    
T  2578131 cttattatgaatagtaagatacattaccaataaaaatatgacattttaa 2578083  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 24188253 - 24188204
Alignment:
Q  162 aatcttatcatgaattgtaagatacattaccaataaaaatataacatttt 211  Q
    |||||||| |||||  |||||||||||||||||||||| |||||||||||    
T  24188253 aatcttattatgaaccgtaagatacattaccaataaaattataacatttt 24188204  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 19454251 - 19454177
Alignment:
Q  138 acctattctccaaatcgtgaaacaaatcttatcatgaattgtaagatacattaccaataaaaatataacatttta 212  Q
    ||||||| ||| |||||||||   |||||||  ||||||||||||||||||| ||| |||||||||  |||||||    
T  19454251 acctattttccgaatcgtgaattgaatcttactatgaattgtaagatacattgccattaaaaatatgtcatttta 19454177  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 5912832 - 5912779
Alignment:
Q  150 aatcgtgaaacaaatcttatcatgaattgtaagatacattaccaataaaaatat 203  Q
    ||||||||| | || |||| ||| |||||||||||||||| |||||||||||||    
T  5912832 aatcgtgaatcgaaacttagcatcaattgtaagatacattgccaataaaaatat 5912779  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 7295739 - 7295702
Alignment:
Q  162 aatcttatcatgaattgtaagatacattaccaataaaa 199  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  7295739 aatcttattatgaattgtaagatacattactaataaaa 7295702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 32117912 - 32117874
Alignment:
Q  162 aatcttatcatgaattgtaagatacattaccaataaaaa 200  Q
    |||||||| || |||||||||||||||||||||||||||    
T  32117912 aatcttattatcaattgtaagatacattaccaataaaaa 32117874  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 20553804 - 20553844
Alignment:
Q  173 gaattgtaagatacattaccaataaaaatataacattttaa 213  Q
    |||| ||||||||||||||| |||||||||| |||||||||    
T  20553804 gaatcgtaagatacattaccgataaaaatatgacattttaa 20553844  T

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