View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20238_low_11 (Length: 214)
Name: NF20238_low_11
Description: NF20238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20238_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 38142091 - 38142275
Alignment:
| Q |
14 |
aatatgcaacgaggttcattcataagctcccatgcaaaaatggttgggtcatccttatacaatactccattaatggtgttctttcttgtcagcacagcct |
113 |
Q |
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| T |
38142091 |
aatatgcaacgaggttcattcataagctcccatgcaaaaatggttgggtcatccttatacaatactccattaatggtgttctttcttgtcagcacagcct |
38142190 |
T |
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| Q |
114 |
gcaatcatcaatccatccaaaatattgtgataccacacttgagttatatataaaatcattaaaaatccatacataattatgtatg |
198 |
Q |
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| T |
38142191 |
gcaatcatcaatccatccaaaatattgtgataccacacttgagttatatataaaatcattaaaaatccatacagaattatgtatg |
38142275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 38155246 - 38155416
Alignment:
| Q |
16 |
tatgcaacgaggttcattcataagctcccatgcaaaaatggttgggtcatccttatacaatactccattaatggtgttctttcttgtcagcacagcctgc |
115 |
Q |
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| T |
38155246 |
tatgcaacgaggttcattcataagctcccatgcaaaaatagttggatcatctttgtataataccccgtttatggtgttctttcttgtcagcacggcctgc |
38155345 |
T |
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| Q |
116 |
aatcatcaatccatccaaaatattgtgataccaca--cttgagttatatataaaatcattaaaaatccata |
184 |
Q |
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| T |
38155346 |
aatcatcaatccatccaaaatactatgttaccaaagttttgagtaatatataaaatcattaacaatccata |
38155416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 38085228 - 38085319
Alignment:
| Q |
29 |
tcattcataagctcccatgcaaaaatggttgggtcatccttatacaatactccattaatggtgttctttcttgtcagcacagcctgcaatca |
120 |
Q |
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| T |
38085228 |
tcattcataagctcccaagcaaaaatagttgggtcatccttgtataacactccactaatggtgttctttcttgtcagcacagcctgtaatca |
38085319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 38110510 - 38110609
Alignment:
| Q |
21 |
aacgaggttcattcataagctcccatgcaaaaatggttgggtcatccttatacaatactccattaatggtgttctttcttgtcagcacagcctgcaatca |
120 |
Q |
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| T |
38110510 |
aacgtggttcgtttataagctcccaagcgaaaatggttggatcatccttatataacaccccatttatagtgttatttcttgtcagcacagcctgcaatca |
38110609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 38090154 - 38090257
Alignment:
| Q |
23 |
cgaggttcattcataagctcccatgcaaaaatggttgggtcatccttatacaatact------ccattaatggtgttctttcttgtcagcacagcctgca |
116 |
Q |
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| T |
38090154 |
cgaggttcattcattagctcccaagcaaaaattgttgggtcatccttgtataacactaacaccccactaatggtgttctttcttgtaagcacaacctgca |
38090253 |
T |
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| Q |
117 |
atca |
120 |
Q |
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|||| |
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| T |
38090254 |
atca |
38090257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 45892949 - 45892898
Alignment:
| Q |
21 |
aacgaggttcattcataagctcccatgcaaaaatggttgggtcatccttata |
72 |
Q |
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| T |
45892949 |
aacgaggttcattcataagctcccatgcaaatatggtcgggtcatccttata |
45892898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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