View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20238_low_2 (Length: 394)

Name: NF20238_low_2
Description: NF20238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20238_low_2
NF20238_low_2
[»] chr7 (16 HSPs)
chr7 (12-186)||(1863347-1863521)
chr7 (189-282)||(9963952-9964045)
chr7 (189-282)||(1507529-1507622)
chr7 (189-282)||(23102669-23102762)
chr7 (190-282)||(9158701-9158793)
chr7 (188-279)||(24790966-24791057)
chr7 (195-282)||(33473615-33473702)
chr7 (314-382)||(1507429-1507497)
chr7 (318-382)||(2658362-2658426)
chr7 (314-378)||(23102794-23102858)
chr7 (190-282)||(1398217-1398310)
chr7 (190-282)||(2658463-2658554)
chr7 (318-382)||(24790863-24790927)
chr7 (314-382)||(9963857-9963921)
chr7 (314-384)||(10982393-10982463)
chr7 (318-382)||(9158601-9158665)
[»] chr6 (7 HSPs)
chr6 (189-282)||(18053509-18053602)
chr6 (195-282)||(13865858-13865945)
chr6 (190-282)||(33483460-33483552)
chr6 (314-366)||(18053425-18053477)
chr6 (190-244)||(31730502-31730555)
chr6 (195-244)||(6851923-6851972)
chr6 (250-282)||(11084280-11084312)
[»] chr4 (12 HSPs)
chr4 (189-282)||(34293272-34293365)
chr4 (189-282)||(34041913-34042006)
chr4 (205-282)||(1688057-1688134)
chr4 (195-279)||(24830987-24831071)
chr4 (314-379)||(7017244-7017309)
chr4 (314-382)||(34293394-34293462)
chr4 (208-275)||(15478120-15478186)
chr4 (317-367)||(34041829-34041879)
chr4 (318-382)||(1687958-1688022)
chr4 (326-382)||(23996268-23996324)
chr4 (314-384)||(46798840-46798910)
chr4 (318-382)||(53732289-53732353)
[»] chr8 (34 HSPs)
chr8 (189-282)||(1565883-1565976)
chr8 (189-282)||(8624996-8625089)
chr8 (189-282)||(44374520-44374613)
chr8 (314-382)||(1566008-1566076)
chr8 (195-282)||(13474797-13474884)
chr8 (314-382)||(9479229-9479297)
chr8 (189-281)||(14124336-14124428)
chr8 (189-282)||(9479104-9479197)
chr8 (186-263)||(4203196-4203273)
chr8 (314-382)||(13474697-13474765)
chr8 (206-282)||(38776385-38776461)
chr8 (189-279)||(42443333-42443422)
chr8 (213-278)||(3469113-3469178)
chr8 (195-276)||(34347500-34347581)
chr8 (213-278)||(42906942-42907007)
chr8 (314-382)||(4203314-4203382)
chr8 (336-382)||(19238365-19238411)
chr8 (336-382)||(19311549-19311595)
chr8 (314-367)||(44374435-44374488)
chr8 (190-238)||(30806034-30806082)
chr8 (314-366)||(38776495-38776547)
chr8 (197-244)||(24478304-24478351)
chr8 (320-382)||(34347614-34347676)
chr8 (326-382)||(3469011-3469067)
chr8 (318-357)||(8625125-8625164)
chr8 (213-267)||(15438390-15438445)
chr8 (213-267)||(15529694-15529749)
chr8 (196-238)||(2979761-2979803)
chr8 (252-282)||(15438532-15438562)
chr8 (252-282)||(15529836-15529866)
chr8 (345-382)||(1554281-1554318)
chr8 (195-244)||(6149095-6149144)
chr8 (205-242)||(44210470-44210507)
chr8 (326-382)||(42907053-42907109)
[»] chr3 (29 HSPs)
chr3 (189-282)||(45713854-45713947)
chr3 (189-282)||(6515339-6515432)
chr3 (189-282)||(42370888-42370981)
chr3 (189-282)||(44682265-44682358)
chr3 (189-282)||(8814456-8814549)
chr3 (189-273)||(6746610-6746694)
chr3 (208-282)||(27077989-27078063)
chr3 (208-282)||(27083786-27083860)
chr3 (189-273)||(6475245-6475330)
chr3 (314-382)||(8814581-8814649)
chr3 (317-382)||(45713982-45714047)
chr3 (314-382)||(6475338-6475406)
chr3 (314-382)||(44682390-44682458)
chr3 (189-254)||(39499543-39499608)
chr3 (213-281)||(93500-93568)
chr3 (314-382)||(6515464-6515532)
chr3 (314-382)||(6746534-6746602)
chr3 (314-382)||(27077889-27077957)
chr3 (314-382)||(27083686-27083754)
chr3 (204-281)||(30991727-30991806)
chr3 (314-367)||(22896687-22896740)
chr3 (314-358)||(42370823-42370867)
chr3 (190-279)||(25891383-25891469)
chr3 (190-240)||(27731510-27731560)
chr3 (314-379)||(25891570-25891635)
chr3 (318-367)||(27065476-27065525)
chr3 (195-244)||(34948278-34948327)
chr3 (338-382)||(30991861-30991905)
chr3 (190-266)||(49080774-49080849)
[»] chr5 (13 HSPs)
chr5 (190-282)||(36896719-36896811)
chr5 (314-382)||(9514607-9514675)
chr5 (209-282)||(9514707-9514780)
chr5 (206-282)||(28867874-28867950)
chr5 (195-277)||(18933439-18933521)
chr5 (190-269)||(26637527-26637606)
chr5 (208-281)||(39057973-39058046)
chr5 (314-382)||(28867774-28867842)
chr5 (314-382)||(36896843-36896911)
chr5 (213-281)||(18014332-18014400)
chr5 (326-382)||(14149140-14149196)
chr5 (336-382)||(18014232-18014278)
chr5 (221-278)||(14149038-14149094)
[»] chr2 (17 HSPs)
chr2 (190-282)||(10862899-10862991)
chr2 (187-282)||(6831501-6831596)
chr2 (189-282)||(31659431-31659524)
chr2 (189-280)||(13829219-13829310)
chr2 (205-282)||(14798831-14798908)
chr2 (314-382)||(6831414-6831482)
chr2 (195-282)||(3670708-3670795)
chr2 (190-277)||(9792169-9792257)
chr2 (314-378)||(13829674-13829738)
chr2 (314-382)||(31659555-31659623)
chr2 (314-382)||(3670609-3670676)
chr2 (318-382)||(10862801-10862865)
chr2 (196-244)||(36911346-36911394)
chr2 (195-244)||(30712221-30712270)
chr2 (318-382)||(14798945-14799009)
chr2 (314-360)||(39443444-39443490)
chr2 (190-275)||(13293866-13293951)
[»] chr1 (31 HSPs)
chr1 (189-281)||(508592-508684)
chr1 (189-282)||(37553213-37553306)
chr1 (195-282)||(13413950-13414037)
chr1 (198-282)||(30694419-30694504)
chr1 (189-282)||(36018038-36018131)
chr1 (205-282)||(49901426-49901503)
chr1 (314-382)||(508491-508559)
chr1 (197-273)||(3979733-3979809)
chr1 (213-281)||(35760352-35760420)
chr1 (190-282)||(32708893-32708983)
chr1 (318-382)||(13413850-13413914)
chr1 (213-281)||(27055804-27055872)
chr1 (314-382)||(37553338-37553406)
chr1 (213-281)||(29119200-29119268)
chr1 (213-281)||(46435314-46435382)
chr1 (314-382)||(49901535-49901603)
chr1 (190-244)||(26214006-26214060)
chr1 (314-372)||(30694536-30694594)
chr1 (190-264)||(46835130-46835204)
chr1 (318-382)||(52594860-52594924)
chr1 (206-277)||(10920642-10920713)
chr1 (196-238)||(26089563-26089605)
chr1 (47-120)||(14864456-14864529)
chr1 (195-275)||(24656357-24656437)
chr1 (326-382)||(27055921-27055977)
chr1 (318-382)||(36018167-36018231)
chr1 (326-382)||(46435214-46435270)
chr1 (336-382)||(29119100-29119146)
chr1 (340-382)||(46832717-46832759)
chr1 (189-265)||(24656510-24656589)
chr1 (326-382)||(35760252-35760308)
[»] scaffold1532 (2 HSPs)
scaffold1532 (188-282)||(1461-1555)
scaffold1532 (318-382)||(1361-1425)
[»] scaffold0002 (2 HSPs)
scaffold0002 (190-281)||(452814-452905)
scaffold0002 (318-382)||(452713-452777)
[»] scaffold0006 (2 HSPs)
scaffold0006 (188-282)||(280486-280580)
scaffold0006 (318-382)||(280386-280450)
[»] scaffold0778 (1 HSPs)
scaffold0778 (314-367)||(3538-3591)
[»] scaffold0356 (1 HSPs)
scaffold0356 (62-135)||(12662-12735)


Alignment Details
Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 1863347 - 1863521
Alignment:
Q  12 tagcaaaggggcacctgaggaacaaatgctctgaggtttcatcagtgattaaacaaaagcaacaaactgaaactataacacaaccccgagcgcggaggtt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| |||||||||    
T  1863347 tagcaaaggggcacctgaggaacaaatgctctgaggtttcatcagtgattaaacaaaagcaacatactgagactataacaaaaccccgagtgcggaggtt 1863446  T
Q  112 ctcatcagttgacatctttccatgaaacaaacgccagaagatgaaagagtgagagggagggacgcaattcctcca 186  Q
    ||||||||| | |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  1863447 ctcatcagtcggcatctttccatgaaacaaacgctagaagatgaaagagtgagaaggagggacgcaattcctcca 1863521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 9964045 - 9963952
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9964045 ttcactaatttacacccactttcatcattccaaatattgtttgcttaaaagtttgtctttattacatgttttgtaccttaagcatgtcattgtc 9963952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 1507622 - 1507529
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||| ||||||||| |||||||||||||| |||||||||||  |||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  1507622 ttcactaatttacacccactttcatcattccaaatattgtttcgttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgtc 1507529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 23102669 - 23102762
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| ||||||    
T  23102669 ttcactaatttacacccactttcatcattccaaatattgtttccttaaaagtttgtctttattacatgttttgtatcttaagcatgttattgtc 23102762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 190 - 282
Target Start/End: Complemental strand, 9158793 - 9158701
Alignment:
Q  190 tcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    |||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  9158793 tcactaatttacacccactttcatcattctaaatattgtttccttaaaagtttgtctctattacatgatttgtaccttaagcatgtcattgtc 9158701  T

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Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 24791057 - 24790966
Alignment:
Q  188 tttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcatt 279  Q
    |||||| |||| ||||||||||||||||||  ||||||||||||||||||| |  || ||||||||||||||||||| ||||| ||||||||    
T  24791057 tttcactaattgacactcactttcatcatttcaaatattgttttcttaaaaatcagtctttattacatgttttgtactttaaggatgtcatt 24790966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 195 - 282
Target Start/End: Original strand, 33473615 - 33473702
Alignment:
Q  195 aatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||||||| |||||||||||||| |||||||  ||||||||||||  || | | |||||||||||||||||||||||||||||||||    
T  33473615 aatttacacccactttcatcattccaaatattactttcttaaaagtaagtctctcttacatgttttgtaccttaagcatgtcattgtc 33473702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 1507497 - 1507429
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||||||||||||||  || |||||||||||||||||||||||||||||||| |||| |||||||||    
T  1507497 aagctagttacaaaatttcccttctatttaaaattaattagaatataaacaaaagggtgttttagtaaa 1507429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 2658426 - 2658362
Alignment:
Q  318 tagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    ||||||||||||||||| |||||||||| |||||||||||| ||||||||||||| |||||||||    
T  2658426 tagttacaaaattgtccttctatttaaatttaattagaatagaaacaaaatggtgttttagtaaa 2658362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 314 - 378
Target Start/End: Original strand, 23102794 - 23102858
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttag 378  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||||| || |||||    
T  23102794 aagctagttacaaaattgcccttctatttaaaattaattagaatataaacaaaatgatgttttag 23102858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 190 - 282
Target Start/End: Original strand, 1398217 - 1398310
Alignment:
Q  190 tcaccaatttacactcacttt-catcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    |||| |||||||||||||||| ||  |||| ||||||||||| ||||||||||||| | |||| |||||||||||| |||||||| ||||||||    
T  1398217 tcactaatttacactcacttttcacaattccaaatattgtttccttaaaagtttgtctctattgcatgttttgtactttaagcatatcattgtc 1398310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 190 - 282
Target Start/End: Complemental strand, 2658554 - 2658463
Alignment:
Q  190 tcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    |||| ||||||||| |||||||||||||| ||||||||||| |||| || |||||   ||||||||||||| |||||||| ||||||||||||    
T  2658554 tcactaatttacac-cactttcatcattccaaatattgtttccttacaaatttgtcactattacatgttttataccttaaacatgtcattgtc 2658463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 24790927 - 24790863
Alignment:
Q  318 tagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||||||||||  || |||||||||||||||||||||||||||||||| | || |||||||||    
T  24790927 tagttacaaaattacccttctatttaaaattaattagaatataaacaaaaggatgttttagtaaa 24790863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 9963921 - 9963857
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||||||||||||||| ||    ||||||||||||||||||||||||||||| |||| |||||||||    
T  9963921 aagctagttacaaaattgccc----atttaaaattaattagaatataaacaaaagggtgttttagtaaa 9963857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 384
Target Start/End: Complemental strand, 10982463 - 10982393
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaaga 384  Q
    ||||||||||| ||| ||  | |||||||||||||||||||||||||| ||||| |||  |||||||||||    
T  10982463 aagctagttacgaaagtgctcttctatttaaaattaattagaatataatcaaaagggtattttagtaaaga 10982393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 9158665 - 9158601
Alignment:
Q  318 tagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    ||||||||||||||||  |||||| ||| ||||| |||||| ||| ||||||||| |||||||||    
T  9158665 tagttacaaaattgtcattctattaaaatttaatcagaatagaaagaaaatggtgttttagtaaa 9158601  T

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Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 18053602 - 18053509
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18053602 ttcactaatttacactcactttcatcattccaaatattgttttcttaaaagtttgtctttattacatgttttgtaccttaagcatgtcattgtc 18053509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 195 - 282
Target Start/End: Original strand, 13865858 - 13865945
Alignment:
Q  195 aatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    |||||||||||||||||||||||| |||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13865858 aatttacactcactttcatcattctaaatattgtttcattaaaagtttgtctttattacatgttttgtaccttaagcatgtcattgtc 13865945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 190 - 282
Target Start/End: Complemental strand, 33483552 - 33483460
Alignment:
Q  190 tcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    |||| ||||||||| |||||||||||||| ||||||||||| ||| ||||||||| | ||||||||||||||||  |||||| ||||||||||    
T  33483552 tcactaatttacacccactttcatcattccaaatattgtttccttgaaagtttgtctctattacatgttttgtatattaagcctgtcattgtc 33483460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 18053477 - 18053425
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaa 366  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  18053477 aagctagttacaaaattgcccttctatttaaaattaattagaatataaacaaa 18053425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 31730502 - 31730555
Alignment:
Q  190 tcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgt 244  Q
    |||| ||||||||| ||||||||||||| || |||||| ||||||||||||||||    
T  31730502 tcactaatttacacccactttcatcatttaacatattg-tttcttaaaagtttgt 31730555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 6851923 - 6851972
Alignment:
Q  195 aatttacactcactttcatcattcaaaatattgttttcttaaaagtttgt 244  Q
    ||||||||| |||||||||||||| ||||||| |||  ||||||||||||    
T  6851923 aatttacacccactttcatcattccaaatattatttctttaaaagtttgt 6851972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 11084280 - 11084312
Alignment:
Q  250 ttacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||||||||||||| |||||||||||||||||    
T  11084280 ttacatgttttgtacattaagcatgtcattgtc 11084312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 34293272 - 34293365
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34293272 ttcactaattttcacccactttcatcattcaaaatattgttttcttaaaagtttgtctttattacatgttttgtaccttaagcatgtcattgtc 34293365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 34042006 - 34041913
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||| |||||||||||| ||||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  34042006 ttcactaatttacactcattttcatcattctaaatattgtttccttaaaagtttgtctttattacatgtttcgtaccttaagcatgtcattgtc 34041913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 205 - 282
Target Start/End: Complemental strand, 1688134 - 1688057
Alignment:
Q  205 cactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    |||||||||||||| |||||||||||  |||||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  1688134 cactttcatcattccaaatattgtttctttaaaaatttgtctttattacatgttttgtacattaagcatgtcattgtc 1688057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 195 - 279
Target Start/End: Complemental strand, 24831071 - 24830987
Alignment:
Q  195 aatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcatt 279  Q
    ||||||||| |||||||||| ||| ||||||||||| ||||||||||||| | |||||||||| ||||| |||||||||||||||    
T  24831071 aatttacacacactttcatcgttccaaatattgtttccttaaaagtttgtctctattacatgtcttgtatcttaagcatgtcatt 24830987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 314 - 379
Target Start/End: Original strand, 7017244 - 7017309
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagt 379  Q
    |||||||||||||||||| || |||| ||||||||||||||||||||||||||| |||| ||||||    
T  7017244 aagctagttacaaaattgcccttctacttaaaattaattagaatataaacaaaagggtgttttagt 7017309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 34293394 - 34293462
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||||||||||||||  || |||||||||||||||||| ||||||||||||| |||| |||||||||    
T  34293394 aagctagttacaaaattacccttctatttaaaattaattataatataaacaaaagggtgttttagtaaa 34293462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 275
Target Start/End: Complemental strand, 15478186 - 15478120
Alignment:
Q  208 tttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgt 275  Q
    |||||||||||||| |||| ||| ||||||||||||| | | ||||||||||||||||||||||||||    
T  15478186 tttcatcattcaaa-tattatttccttaaaagtttgtctctgttacatgttttgtaccttaagcatgt 15478120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 34041879 - 34041829
Alignment:
Q  317 ctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaa 367  Q
    |||||||||||||||||| |  |||||||||| ||||||||||||||||||    
T  34041879 ctagttacaaaattgtcctttcatttaaaattgattagaatataaacaaaa 34041829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 1688022 - 1687958
Alignment:
Q  318 tagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    ||||||||||| ||||  |||||||||| |||||||||||| |||||||| |||| ||| |||||    
T  1688022 tagttacaaaaatgtcattctatttaaatttaattagaatagaaacaaaagggtgttttcgtaaa 1687958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 23996324 - 23996268
Alignment:
Q  326 aaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||| || |||||||||| |||||||||||| |||||||| |||| |||||||||    
T  23996324 aaattgcccttctatttaaatttaattagaatagaaacaaaaaggtgttttagtaaa 23996268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 46798840 - 46798910
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaaga 384  Q
    ||||||||||||||| || |  ||||||||| |||||||| ||||||| |||||  ||| |||||||||||    
T  46798840 aagctagttacaaaagtgccattctatttaatattaattaaaatataatcaaaagagtgttttagtaaaga 46798910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 53732289 - 53732353
Alignment:
Q  318 tagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    ||||||||||| |  || |||||||||| |||||||||||| |||||||| | || |||||||||    
T  53732289 tagttacaaaactacccttctatttaaatttaattagaatagaaacaaaaggatgttttagtaaa 53732353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 1565883 - 1565976
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1565883 ttcactaatttacacccactttcatcattccaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaagcatgtcattgtc 1565976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 8624996 - 8625089
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||| ||||||||||||||||||| |||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8624996 ttcactaatttacactcactttcattattccaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaagcatgtcattgtc 8625089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 44374613 - 44374520
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||| ||||||||| |||||||||||||| ||||||| ||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  44374613 ttcactaatttacacccactttcatcattccaaatattatttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgtc 44374520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 1566008 - 1566076
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  1566008 aagctagttacaaaattgtccttctatttaaaattaattagaatataaacaaaatggtgttttagtaaa 1566076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 13474884 - 13474797
Alignment:
Q  195 aatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||||||| |||||| ||||||  ||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13474884 aatttacacccacttttatcatttcaaatattgtttccataaaagtttgtctttattacatgttttgtaccttaagcatgtcattgtc 13474797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 9479229 - 9479297
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||    
T  9479229 aagctagttacaaaattgcccttctatttaaaattaattagaatataaacaaaatggtgttttagtaaa 9479297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 189 - 281
Target Start/End: Complemental strand, 14124428 - 14124336
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgt 281  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||| ||||||| |   ||||||||||||||| ||||||||||| ||||||    
T  14124428 ttcactaatttacactcactttcatcattccaaatattgttttcttgaaagtttatccatattacatgttttgtcccttaagcatgccattgt 14124336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 9479104 - 9479197
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||| |||| |||| |||||||||||||| ||||||||||| ||||||||| ||| ||||| | ||||||| |||||||||||||||||||||    
T  9479104 ttcactaattaacacccactttcatcattccaaatattgtttccttaaaagtctgtctttatcatatgttttataccttaagcatgtcattgtc 9479197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 186 - 263
Target Start/End: Original strand, 4203196 - 4203273
Alignment:
Q  186 actttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgta 263  Q
    |||||||| ||||||||| |||||||||||||  ||||||||||| ||||||||||||| |||||||||||| |||||    
T  4203196 actttcactaatttacacccactttcatcatttcaaatattgtttccttaaaagtttgtctttattacatgtattgta 4203273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 13474765 - 13474697
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| | |||||||    
T  13474765 aagctagttacaaaattgcccttctatttaaaattaattagaatataaacaaaagggtgttctagtaaa 13474697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 206 - 282
Target Start/End: Original strand, 38776385 - 38776461
Alignment:
Q  206 actttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||||||||||  |||||||||||  |||||||||||| ||||||| |||||||||||||||| ||||||||||||    
T  38776385 actttcatcattttaaatattgtttctttaaaagtttgtctttattatatgttttgtaccttaaacatgtcattgtc 38776461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 189 - 279
Target Start/End: Complemental strand, 42443422 - 42443333
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcatt 279  Q
    ||||| ||||||||  |||||| ||||||| ||||||| ||| ||||||||||||| |||||| ||||||||||| |||||||||||||||    
T  42443422 ttcactaatttacatccacttttatcattccaaatattatttccttaaaagtttgtctttattgcatgttttgta-cttaagcatgtcatt 42443333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 3469178 - 3469113
Alignment:
Q  213 tcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcat 278  Q
    |||||| ||||||||||| ||||||||||||| | ||||||||||||| |||||||||||||||||    
T  3469178 tcattctaaatattgtttccttaaaagtttgtctctattacatgttttataccttaagcatgtcat 3469113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 195 - 276
Target Start/End: Original strand, 34347500 - 34347581
Alignment:
Q  195 aatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtc 276  Q
    ||||||||| |||||||||||||| || ||||||||  |||||||||||| | ||||| ||||||||||| |||||||||||    
T  34347500 aatttacacccactttcatcattctaagtattgtttcattaaaagtttgtctctattatatgttttgtactttaagcatgtc 34347581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 42906942 - 42907007
Alignment:
Q  213 tcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcat 278  Q
    |||||| ||||||||||| ||||||||||||| | ||||||||||||| |||||||||||||||||    
T  42906942 tcattctaaatattgtttccttaaaagtttgtctctattacatgttttataccttaagcatgtcat 42907007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 4203314 - 4203382
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||||| |||||||||||  |||||||||||||||||| ||||||||||||| |||| |||||||||    
T  4203314 aagctagtcacaaaattgtcattctatttaaaattaattaaaatataaacaaaaaggtgttttagtaaa 4203382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 19238411 - 19238365
Alignment:
Q  336 tctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||    
T  19238411 tctattaaaaattaattagaatataaacaaaatggtgttttagtaaa 19238365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 19311595 - 19311549
Alignment:
Q  336 tctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||    
T  19311595 tctattaaaaattaattagaatataaacaaaatggtgttttagtaaa 19311549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 367
Target Start/End: Complemental strand, 44374488 - 44374435
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaa 367  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||| ||||    
T  44374488 aagctagttacaaaattgtatttctatttaaaattaattagaatataaaaaaaa 44374435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 30806034 - 30806082
Alignment:
Q  190 tcaccaatttacactcactttcatcattcaaaatattgttttcttaaaa 238  Q
    |||| |||||||||||||||||||||||| ||||||||||| |||||||    
T  30806034 tcactaatttacactcactttcatcattccaaatattgtttccttaaaa 30806082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 38776495 - 38776547
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaa 366  Q
    |||||||||||||||||  || || ||||||||||||||||||||||||||||    
T  38776495 aagctagttacaaaattacccttcaatttaaaattaattagaatataaacaaa 38776547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 24478304 - 24478351
Alignment:
Q  197 tttacactcactttcatcattcaaaatattgttttcttaaaagtttgt 244  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  24478304 tttacactcactttcatcattctaaatattatttccttaaaagtttgt 24478351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 382
Target Start/End: Original strand, 34347614 - 34347676
Alignment:
Q  320 gttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    ||||||||||||||  |||| ||||| |||||||||||| ||||||||||||| |||| ||||    
T  34347614 gttacaaaattgtcattctaattaaatttaattagaatagaaacaaaatggtgttttaataaa 34347676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 3469067 - 3469011
Alignment:
Q  326 aaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||| || |||||||||| |||||||||||| |||||||| |||| |||||||||    
T  3469067 aaattgcccttctatttaaatttaattagaatagaaacaaaaaggtgttttagtaaa 3469011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 357
Target Start/End: Original strand, 8625125 - 8625164
Alignment:
Q  318 tagttacaaaattgtccctctatttaaaattaattagaat 357  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  8625125 tagttacaaaattgcccttctatttaaaattaattagaat 8625164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 267
Target Start/End: Original strand, 15438390 - 15438445
Alignment:
Q  213 tcattcaaaatattgttttcttaaaagtttgtatttattacatgttt-tgtacctt 267  Q
    |||||| ||||||||||| ||||||||||| | |||||||||||||| ||||||||    
T  15438390 tcattccaaatattgtttccttaaaagtttatctttattacatgtttgtgtacctt 15438445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 267
Target Start/End: Original strand, 15529694 - 15529749
Alignment:
Q  213 tcattcaaaatattgttttcttaaaagtttgtatttattacatgttt-tgtacctt 267  Q
    |||||| ||||||||||| ||||||||||| | |||||||||||||| ||||||||    
T  15529694 tcattccaaatattgtttccttaaaagtttatctttattacatgtttgtgtacctt 15529749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 2979803 - 2979761
Alignment:
Q  196 atttacactcactttcatcattcaaaatattgttttcttaaaa 238  Q
    |||||||| |||||||||| |||| ||||||||||||||||||    
T  2979803 atttacacacactttcatcgttcagaatattgttttcttaaaa 2979761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 282
Target Start/End: Original strand, 15438532 - 15438562
Alignment:
Q  252 acatgttttgtaccttaagcatgtcattgtc 282  Q
    |||||||||||||||||||||||||||||||    
T  15438532 acatgttttgtaccttaagcatgtcattgtc 15438562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 282
Target Start/End: Original strand, 15529836 - 15529866
Alignment:
Q  252 acatgttttgtaccttaagcatgtcattgtc 282  Q
    |||||||||||||||||||||||||||||||    
T  15529836 acatgttttgtaccttaagcatgtcattgtc 15529866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 382
Target Start/End: Original strand, 1554281 - 1554318
Alignment:
Q  345 aattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  1554281 aattaattagaatataaataaaatggtgttttagtaaa 1554318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 6149095 - 6149144
Alignment:
Q  195 aatttacactcactttcatcattcaaaatattgttttcttaaaagtttgt 244  Q
    ||||||||| ||||| |||||||  ||||||||||||||||||| |||||    
T  6149095 aatttacacccacttccatcatttcaaatattgttttcttaaaaatttgt 6149144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 44210507 - 44210470
Alignment:
Q  205 cactttcatcattcaaaatattgttttcttaaaagttt 242  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  44210507 cacttttatcatttaaaatattgttttcttaaaagttt 44210470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 382
Target Start/End: Original strand, 42907053 - 42907109
Alignment:
Q  326 aaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||| || || ||||||| |||||||||||| |||||||| |||| |||||||||    
T  42907053 aaattgcccttcaatttaaatttaattagaatagaaacaaaaaggtgttttagtaaa 42907109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 45713854 - 45713947
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||| |||||||| ||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  45713854 ttcactaatttacattcactttcatcattccaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaaacatgtcattgtc 45713947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 6515339 - 6515432
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||| |||||||||||||||||||||||  ||||||| ||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  6515339 ttcactaatttacactcactttcatcatttcaaatattatttccttaaaagtttgtctttattacatgttttgtatcttaagcatgtcattgtc 6515432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 42370981 - 42370888
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||| |||||||||||||||||||||||| ||||||| |||  |||||||||||| ||||||||||||||||||| |||||||||| ||||||    
T  42370981 ttcactaatttacactcactttcatcattccaaatattatttcgttaaaagtttgtctttattacatgttttgtacattaagcatgttattgtc 42370888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 44682265 - 44682358
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||| ||||||||| || ||||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||||||    
T  44682265 ttcactaatttacacccattttcatcattccaaatattgtttccttaaaagtttgtctttattacatgtttagtaccttaatcatgtcattgtc 44682358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 8814456 - 8814549
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||| ||||||||| |||||||||||||| |||||||| || ||||||||||| | ||||||||||||||||||| ||||| |||||||||||    
T  8814456 ttcactaatttacacccactttcatcattccaaatattgcttccttaaaagtttatctttattacatgttttgtactttaagtatgtcattgtc 8814549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 189 - 273
Target Start/End: Complemental strand, 6746694 - 6746610
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcat 273  Q
    ||||| ||||||||| |||||||||||||  ||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  6746694 ttcactaatttacacccactttcatcattttaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttacgcat 6746610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 208 - 282
Target Start/End: Complemental strand, 27078063 - 27077989
Alignment:
Q  208 tttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||||||||| |||||||||||  |||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  27078063 tttcatcattccaaatattgtttcattaaaagtttgtctttattatatgttttgtaccttaagcatgtcattgtc 27077989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 208 - 282
Target Start/End: Complemental strand, 27083860 - 27083786
Alignment:
Q  208 tttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||||||||| |||||||||||  |||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  27083860 tttcatcattccaaatattgtttcattaaaagtttgtctttattatatgttttgtaccttaagcatgtcattgtc 27083786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 189 - 273
Target Start/End: Original strand, 6475245 - 6475330
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatg-ttttgtaccttaagcat 273  Q
    ||||| ||||||||| || ||||||||||| ||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||    
T  6475245 ttcactaatttacacccagtttcatcattccaaatattgtttccttaaaagtttgtctttattacatgtttttgtaccttaagcat 6475330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 8814581 - 8814649
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||| |||||    
T  8814581 aagctagttacaaaattgtcattctatttaaaattaattagaatataaacaaaatggtgttttggtaaa 8814649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 382
Target Start/End: Original strand, 45713982 - 45714047
Alignment:
Q  317 ctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| |||||||||    
T  45713982 ctagttacaaaattgtccttctattaaaaattaattagaatataaacaaaagggtgttttagtaaa 45714047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 6475338 - 6475406
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||  ||| |||||||||    
T  6475338 aagctagttacaaaattgcccttctatttaaaattaattagaatataaacaaaagagtgttttagtaaa 6475406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 44682390 - 44682458
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||  ||| |||||||||    
T  44682390 aagctagttacaaaattgttcttctatttaaaattaattagaatataaacaaaagtgtgttttagtaaa 44682458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 39499543 - 39499608
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattaca 254  Q
    ||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||| |||||||||    
T  39499543 ttcactaatttacacccactttcatcatttcaaatattgttttcttaaaagtttgtctttattaca 39499608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 93500 - 93568
Alignment:
Q  213 tcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgt 281  Q
    |||||| ||||||||||| ||||||||||||| | ||||||||||||| ||||||||| ||||||||||    
T  93500 tcattctaaatattgtttccttaaaagtttgtctctattacatgttttataccttaagtatgtcattgt 93568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 6515464 - 6515532
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    ||||||||| |||||||| || ||||||||||||||||||||||| |||||||| |||| |||||||||    
T  6515464 aagctagttgcaaaattgcccttctatttaaaattaattagaatacaaacaaaagggtgttttagtaaa 6515532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 6746602 - 6746534
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||||||||||||||| || ||||||||||||||| ||||||||||||||||  ||| |||||||||    
T  6746602 aagctagttacaaaattgcccttctatttaaaattaactagaatataaacaaaagagtgttttagtaaa 6746534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 27077957 - 27077889
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||||||||||||||| |  |||||||||||||||||||||||||||||||| |||| | |||||||    
T  27077957 aagctagttacaaaattgcctttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 27077889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 27083754 - 27083686
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||||||||||||||| |  |||||||||||||||||||||||||||||||| |||| | |||||||    
T  27083754 aagctagttacaaaattgcctttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaa 27083686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 281
Target Start/End: Original strand, 30991727 - 30991806
Alignment:
Q  204 tcactttcatc--attcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgt 281  Q
    |||||||||||  |||| ||||||| ||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||    
T  30991727 tcactttcatcccattctaaatattatttccttaaaagtttgtctctattacatgttttataccttaagcatgtcattgt 30991806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 367
Target Start/End: Original strand, 22896687 - 22896740
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaa 367  Q
    ||||||||||||||| |  || ||||||||||||||||||||||||||||||||    
T  22896687 aagctagttacaaaactacccttctatttaaaattaattagaatataaacaaaa 22896740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 314 - 358
Target Start/End: Complemental strand, 42370867 - 42370823
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaata 358  Q
    |||||||||||||||||| || |||||||||||||||||||||||    
T  42370867 aagctagttacaaaattgcccttctatttaaaattaattagaata 42370823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 279
Target Start/End: Original strand, 25891383 - 25891469
Alignment:
Q  190 tcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcatt 279  Q
    |||| ||||||||| |||||||||| ||| ||| ||| |||||||||||||||||  |||||  ||||||| ||||||||||||| ||||    
T  25891383 tcactaatttacacccactttcatccttccaaagatttttttcttaaaagtttgtccttatt--atgtttt-taccttaagcatgccatt 25891469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 27731560 - 27731510
Alignment:
Q  190 tcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagt 240  Q
    |||| ||||||||| |||||||||||||  |||||||||||||||||||||    
T  27731560 tcactaatttacacacactttcatcatttcaaatattgttttcttaaaagt 27731510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 379
Target Start/End: Original strand, 25891570 - 25891635
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagt 379  Q
    |||||||| |||||| ||||  || |||||||||||||||||||||||| ||||||| | ||||||    
T  25891570 aagctagtaacaaaagtgtcattcaatttaaaattaattagaatataaataaaatggagttttagt 25891635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 27065476 - 27065525
Alignment:
Q  318 tagttacaaaattgtccctctatttaaaattaattagaatataaacaaaa 367  Q
    ||||||||||||||||| | |||||||| |||||||||||| ||||||||    
T  27065476 tagttacaaaattgtccttttatttaaatttaattagaatagaaacaaaa 27065525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 34948278 - 34948327
Alignment:
Q  195 aatttacactcactttcatcattcaaaatattgttttcttaaaagtttgt 244  Q
    ||||||||| ||||| |||||||| ||||||| ||| |||||||||||||    
T  34948278 aatttacacccacttccatcattctaaatattatttccttaaaagtttgt 34948327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 30991861 - 30991905
Alignment:
Q  338 tatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||||| |||||||||||| |||||||| |||| |||||||||    
T  30991861 tatttaaatttaattagaatagaaacaaaaaggtgttttagtaaa 30991905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 266
Target Start/End: Complemental strand, 49080849 - 49080774
Alignment:
Q  190 tcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtacct 266  Q
    |||| |||||||| ||||||||||||||  |||||||||||  |||||| |||||   ||||| |||||||||||||    
T  49080849 tcactaatttaca-tcactttcatcatttcaaatattgtttctttaaaaatttgtccatattatatgttttgtacct 49080774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 190 - 282
Target Start/End: Original strand, 36896719 - 36896811
Alignment:
Q  190 tcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    |||| ||||||||  |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||    
T  36896719 tcactaatttacatccactttcatcattctaaatattgttttcttaaaagtttgtctttattacatgttttgtatcttaagcatgttattgtc 36896811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 9514675 - 9514607
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||    
T  9514675 aagctagttacaaaattgtccttctatttaaaattaattagaatataaacaaaagggtgttttagtaaa 9514607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 209 - 282
Target Start/End: Complemental strand, 9514780 - 9514707
Alignment:
Q  209 ttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    |||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  9514780 ttcatctttccaaatattgtttccttaaaagtttgtctttattacatgttttgtaccttaagcatggcattgtc 9514707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 28867950 - 28867874
Alignment:
Q  206 actttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||||||||||| ||||| ||||| ||||||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  28867950 actttcatcattccaaataatgtttccttaaaaatttgtctttattacatgtattgtaccttaagcatgtcattgtc 28867874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 277
Target Start/End: Complemental strand, 18933521 - 18933439
Alignment:
Q  195 aatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtca 277  Q
    |||||||||||||||||||||||  |||||||||||  ||||||||||||   |||||||||||||||| |||||| ||||||    
T  18933521 aatttacactcactttcatcattttaaatattgtttctttaaaagtttgtccatattacatgttttgtatcttaagtatgtca 18933439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 190 - 269
Target Start/End: Complemental strand, 26637606 - 26637527
Alignment:
Q  190 tcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaa 269  Q
    |||| ||||||||| |||||||||||||  ||||||||||| ||||||||||||   |||||||||||||| ||||||||    
T  26637606 tcactaatttacacccactttcatcatttcaaatattgtttacttaaaagtttgctattattacatgttttttaccttaa 26637527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 39058046 - 39057973
Alignment:
Q  208 tttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgt 281  Q
    ||||||||||| ||||||||||| ||||||||||| | | | ||||||||||| ||||||||||||||| ||||    
T  39058046 tttcatcattctaaatattgtttccttaaaagtttttctctgttacatgttttataccttaagcatgtctttgt 39057973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 28867842 - 28867774
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    ||||| ||||| |||||| || ||||||||||||||||||||||||||||||||  ||| |||||||||    
T  28867842 aagctggttacgaaattgcccttctatttaaaattaattagaatataaacaaaaatgtgttttagtaaa 28867774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 36896843 - 36896911
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    ||||| ||||||||||||  | ||||||| |||||||||||||||||||||||| |||| |||||||||    
T  36896843 aagctggttacaaaattgcacttctattttaaattaattagaatataaacaaaagggtgttttagtaaa 36896911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 18014400 - 18014332
Alignment:
Q  213 tcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgt 281  Q
    |||||| ||||||| ||| ||||||||||| | | ||||||||||||| || |||||||||||||||||    
T  18014400 tcattctaaatattatttccttaaaagtttatctctattacatgttttatatcttaagcatgtcattgt 18014332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 382
Target Start/End: Original strand, 14149140 - 14149196
Alignment:
Q  326 aaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||| || |||||||||| |||||||||||| |||||||| |||| |||||||||    
T  14149140 aaattgcccttctatttaaatttaattagaatagaaacaaaaaggtgttttagtaaa 14149196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 18014278 - 18014232
Alignment:
Q  336 tctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||||||| |||||||||||| |||||||| |||| |||||||||    
T  18014278 tctatttaaatttaattagaatagaaacaaaaaggtgttttagtaaa 18014232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 14149038 - 14149094
Alignment:
Q  221 aatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcat 278  Q
    |||||||||| ||||||||||||| | ||| ||||||||| || ||||||||||||||    
T  14149038 aatattgtttccttaaaagtttgtctctatcacatgttttata-cttaagcatgtcat 14149094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 190 - 282
Target Start/End: Complemental strand, 10862991 - 10862899
Alignment:
Q  190 tcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    |||| ||||||||| |||||||||||||  ||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  10862991 tcactaatttacacccactttcatcatttcaaatattgtttccttaaaagtttgtccttattacatgttttgtaccttaagcatgtcattgtc 10862899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 187 - 282
Target Start/End: Complemental strand, 6831596 - 6831501
Alignment:
Q  187 ctttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||||| ||||||||| |||||||||||||| |||||||||||  ||| |||||||| |||||||||||||||||||||||| ||||||||||||    
T  6831596 ctttcactaatttacacccactttcatcattccaaatattgtttctttacaagtttgtctttattacatgttttgtaccttaaacatgtcattgtc 6831501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 31659431 - 31659524
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||| ||||||||| |||||||||||||| ||||||||||   |||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  31659431 ttcactaatttacacccactttcatcattccaaatattgttactttaaaagtttgtctttattatatgttttgtaccttaagcatgtcattgtc 31659524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 189 - 280
Target Start/End: Original strand, 13829219 - 13829310
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattg 280  Q
    ||||| ||||||||  |||||||||||||| ||||||||||| ||||||||||||| ||||||||| ||| |||||||||||||||||||||    
T  13829219 ttcactaatttacatccactttcatcattccaaatattgtttccttaaaagtttgtctttattacaagttatgtaccttaagcatgtcattg 13829310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 205 - 282
Target Start/End: Original strand, 14798831 - 14798908
Alignment:
Q  205 cactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    |||||||||| ||| ||||||||||| ||||||||||||| | |||||||||||||||| ||||||||||||||||||    
T  14798831 cactttcatcgttctaaatattgtttccttaaaagtttgtctctattacatgttttgtatcttaagcatgtcattgtc 14798908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 6831482 - 6831414
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| |||||||||    
T  6831482 aagctagttacaaaattgcccttctatttaaaattaattagaatataaacaaaagggtgttttagtaaa 6831414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 3670795 - 3670708
Alignment:
Q  195 aatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||||||| || ||||||||||  ||||||| ||| ||||||| ||||| ||||||| |||||||||||||||||||||||||||||    
T  3670795 aatttacacccagtttcatcatttcaaatattatttccttaaaaatttgtctttattatatgttttgtaccttaagcatgtcattgtc 3670708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 190 - 277
Target Start/End: Complemental strand, 9792257 - 9792169
Alignment:
Q  190 tcaccaatttacactcactttcatcattc-aaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtca 277  Q
    |||| ||||||||  |||||||||||||| ||||||||||||||||| ||||||||  |||||||||| ||||||||||||| ||||||    
T  9792257 tcactaatttacatccactttcatcattctaaaatattgttttcttataagtttgtccttattacatgctttgtaccttaagtatgtca 9792169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 314 - 378
Target Start/End: Original strand, 13829674 - 13829738
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttag 378  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| |||||    
T  13829674 aagctagttacaaaattgcccttctatttaaaattaattagaatataaacaaaagggtgttttag 13829738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 31659555 - 31659623
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||||||||||||||| || |||||||||| ||||||||||||||||||||| |||| |||||||||    
T  31659555 aagctagttacaaaattgcccttctatttaaatttaattagaatataaacaaaagggtgttttagtaaa 31659623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 3670676 - 3670609
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||||||||||| ||| || |||||||||||||||||||||||||||||||| |||| |||||||||    
T  3670676 aagctagttacaaa-ttgcccttctatttaaaattaattagaatataaacaaaagggtgttttagtaaa 3670609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 10862865 - 10862801
Alignment:
Q  318 tagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    ||||||||||| || || |||||||||| |||||||||||| |||||||| |||| |||||||||    
T  10862865 tagttacaaaactgcccttctatttaaatttaattagaatagaaacaaaagggtgttttagtaaa 10862801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 36911346 - 36911394
Alignment:
Q  196 atttacactcactttcatcattcaaaatattgttttcttaaaagtttgt 244  Q
    |||||||| |||||||||||||||||||||||||| ||| |||||||||    
T  36911346 atttacacccactttcatcattcaaaatattgtttccttcaaagtttgt 36911394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 30712221 - 30712270
Alignment:
Q  195 aatttacactcactttcatcattcaaaatattgttttcttaaaagtttgt 244  Q
    |||||||||||| |||||||||||||||| ||||||  ||||||||||||    
T  30712221 aatttacactcattttcatcattcaaaatgttgtttcattaaaagtttgt 30712270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 14798945 - 14799009
Alignment:
Q  318 tagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    ||||||||||| || || |||||||||| |||||||||||| ||| |||||| || |||||||||    
T  14798945 tagttacaaaactgcccttctatttaaatttaattagaatagaaataaaatgatgttttagtaaa 14799009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 39443490 - 39443444
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatata 360  Q
    |||||||||||||||||| |  ||||||||||||||| |||||||||    
T  39443490 aagctagttacaaaattgacattctatttaaaattaactagaatata 39443444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 13293866 - 13293951
Alignment:
Q  190 tcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgt 275  Q
    |||| ||||||||| || ||| ||||||| | ||||||||| |||||| ||||||  |||||||   ||||||||||| |||||||    
T  13293866 tcactaatttacacacatttttatcattccagatattgtttccttaaatgtttgtcattattactaattttgtaccttgagcatgt 13293951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 189 - 281
Target Start/End: Complemental strand, 508684 - 508592
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgt 281  Q
    ||||| |||||||||||||||| ||||||  ||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  508684 ttcactaatttacactcacttttatcatttcaaatattgtttccttaaaagtttgtctttattacatattttgtaccttaagcatgtcattgt 508592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 37553213 - 37553306
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||| ||||||||| || ||||||| ||  |||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37553213 ttcactaatttacacccattttcatcgtttcaaatattgtttctttaaaagtttgtctttattacatgttttgtaccttaagcatgtcattgtc 37553306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 13414037 - 13413950
Alignment:
Q  195 aatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||||||| |||||||||||||  ||||||||||| ||||||||||||| ||||||| ||||||||||| |||| ||||||||||||    
T  13414037 aatttacacccactttcatcatttcaaatattgtttccttaaaagtttgtctttattatatgttttgtactttaaacatgtcattgtc 13413950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 198 - 282
Target Start/End: Original strand, 30694419 - 30694504
Alignment:
Q  198 ttacactcactttcatcattcaaaatattgttttct-taaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    |||||| |||||||||||||| |||||||||||  | ||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  30694419 ttacacccactttcatcattctaaatattgtttcttgtaaaagtttgtctttattacatgttttgtacgttaagcatgtcattgtc 30694504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 36018038 - 36018131
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    ||||| ||||| ||| |||||| ||||||  ||||||||||| ||||||| ||||| | |||||||||||||||||||||| ||||||||||||    
T  36018038 ttcactaatttgcacccacttttatcatttcaaatattgtttccttaaaaatttgtctctattacatgttttgtaccttaaacatgtcattgtc 36018131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 205 - 282
Target Start/End: Original strand, 49901426 - 49901503
Alignment:
Q  205 cactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    |||||||||||||  |||||||||||| |||||||||||| |||||||||| ||||||||||||| ||| ||||||||    
T  49901426 cactttcatcatttcaaatattgtttttttaaaagtttgtctttattacatattttgtaccttaaacatttcattgtc 49901503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 508559 - 508491
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||  ||| |||||||||    
T  508559 aagctagttacaaaattgcccttctatttaaaattaattagaatataaacaaaagagtgttttagtaaa 508491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 3979733 - 3979809
Alignment:
Q  197 tttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcat 273  Q
    ||||||| |||||||||||||| || |||||||| ||||||||||| | | ||||||||||||||||||||||||||    
T  3979733 tttacacccactttcatcattccaactattgtttccttaaaagtttatctctattacatgttttgtaccttaagcat 3979809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 35760420 - 35760352
Alignment:
Q  213 tcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgt 281  Q
    |||||| ||||||||||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||    
T  35760420 tcattctaaatattgtttccttaaaagtttgtctgtattacatgttttataccttaagcatgtcattgt 35760352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 190 - 282
Target Start/End: Complemental strand, 32708983 - 32708893
Alignment:
Q  190 tcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    |||| ||||||||| ||||||||| |||| ||||||| ||||||||||||||||  | |||||||||||||||| |||||  |||||||||||    
T  32708983 tcactaatttacacccactttcatgattccaaatattattttcttaaaagtttg--tctattacatgttttgtatcttaaatatgtcattgtc 32708893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 13413914 - 13413850
Alignment:
Q  318 tagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    ||||||||||| || |  ||||||||||||||||||||||||||||||||||||| |||||||||    
T  13413914 tagttacaaaactgccattctatttaaaattaattagaatataaacaaaatggtgttttagtaaa 13413850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 27055804 - 27055872
Alignment:
Q  213 tcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgt 281  Q
    |||||| ||||||||||| ||||||||||||| | |||||||| |||| ||||||||||||||||||||    
T  27055804 tcattctaaatattgtttccttaaaagtttgtctctattacatattttataccttaagcatgtcattgt 27055872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 37553338 - 37553406
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||||||||||||||  || ||||||||||||||||||||||||||||||||  ||| |||||||||    
T  37553338 aagctagttacaaaatttcccttctatttaaaattaattagaatataaacaaaagagtgttttagtaaa 37553406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 29119268 - 29119200
Alignment:
Q  213 tcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgt 281  Q
    |||||| ||||||||||| ||||||||||||| | ||||||||||||| |||||||| |||| ||||||    
T  29119268 tcattctaaatattgtttccttaaaagtttgtctctattacatgttttataccttaaacatgccattgt 29119200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 46435382 - 46435314
Alignment:
Q  213 tcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgt 281  Q
    |||||| ||||||||||| ||||||||||||| | ||||||||||||| |||||||  |||||||||||    
T  46435382 tcattctaaatattgtttccttaaaagtttgtctctattacatgttttataccttagacatgtcattgt 46435314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 49901535 - 49901603
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||| |||||||||||||  ||||||||||||||||||||||||||| |||| |||  |||||||||    
T  49901535 aagctaattacaaaattgtcattctatttaaaattaattagaatataaataaaagggtcttttagtaaa 49901603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 26214006 - 26214060
Alignment:
Q  190 tcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgt 244  Q
    |||| ||||||||| ||||||||||||| |||||||| |||||||||||||||||    
T  26214006 tcactaatttacacccactttcatcatttaaaatattattttcttaaaagtttgt 26214060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 314 - 372
Target Start/End: Original strand, 30694536 - 30694594
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtg 372  Q
    ||||||||||||||| ||||| | |||||||||||||||| ||||||||||||| ||||    
T  30694536 aagctagttacaaaactgtccttttatttaaaattaattataatataaacaaaagggtg 30694594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 46835204 - 46835130
Alignment:
Q  190 tcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtac 264  Q
    |||| ||||||||| |||||||||||||  ||||||| |||  |||||||||||| | |||||||||||||||||    
T  46835204 tcactaatttacacccactttcatcatttcaaatattatttgtttaaaagtttgtctctattacatgttttgtac 46835130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 52594924 - 52594860
Alignment:
Q  318 tagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    ||||||||||||||||| ||| |||||| |||||||||||| ||| ||||||||| |||| ||||    
T  52594924 tagttacaaaattgtccttctgtttaaatttaattagaataaaaataaaatggtgttttaataaa 52594860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 277
Target Start/End: Original strand, 10920642 - 10920713
Alignment:
Q  206 actttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtca 277  Q
    ||||||||||||  ||||||||||| ||| |||||||||   ||||||||||||||||| |||| |||||||    
T  10920642 actttcatcattttaaatattgtttccttgaaagtttgtccctattacatgttttgtacattaaacatgtca 10920713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 26089605 - 26089563
Alignment:
Q  196 atttacactcactttcatcattcaaaatattgttttcttaaaa 238  Q
    ||||||||||||||||||||||| ||||||||||| |||||||    
T  26089605 atttacactcactttcatcattctaaatattgtttccttaaaa 26089563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 14864529 - 14864456
Alignment:
Q  47 gtttcatcagtgattaaacaaaagcaacaaactgaaactataacacaaccccgagcgcggaggttctcatcagt 120  Q
    |||||||  ||| |||| |||||||||||| | |||||||| ||||||||||| |  |||||||||||||||||    
T  14864529 gtttcatttgtgtttaagcaaaagcaacaagcagaaactattacacaaccccgcgtacggaggttctcatcagt 14864456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 275
Target Start/End: Original strand, 24656357 - 24656437
Alignment:
Q  195 aatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgt 275  Q
    ||||||||||||| |||||||||  ||||||| ||  |||||||||||||   ||||||||||||| || || ||||||||    
T  24656357 aatttacactcacattcatcatttcaaatattattaccttaaaagtttgttcatattacatgttttctatctaaagcatgt 24656437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 382
Target Start/End: Original strand, 27055921 - 27055977
Alignment:
Q  326 aaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||| || |||||||||| |||||||||||| |||||||| |||| |||||||||    
T  27055921 aaattgcccttctatttaaatttaattagaatagaaacaaaaaggtgttttagtaaa 27055977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 36018167 - 36018231
Alignment:
Q  318 tagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    ||||||||||| ||||  |||||||||| ||||||| |||| ||| ||||||||| |||||||||    
T  36018167 tagttacaaaactgtcattctatttaaatttaattaaaatagaaataaaatggtgttttagtaaa 36018231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 46435270 - 46435214
Alignment:
Q  326 aaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||| || |||||||||| |||||||||||| |||||||| |||| |||||||||    
T  46435270 aaattgcccttctatttaaatttaattagaatagaaacaaaaaggtgttttagtaaa 46435214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 29119146 - 29119100
Alignment:
Q  336 tctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||||||| |||||||||||| |||||||| |||| |||||||||    
T  29119146 tctatttaaatttaattagaatagaaacaaaaaggtgttttagtaaa 29119100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 46832759 - 46832717
Alignment:
Q  340 tttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||| |||||||||||| ||||||||||||| |||||||||    
T  46832759 tttaaatttaattagaatagaaacaaaatggtgttttagtaaa 46832717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 24656510 - 24656589
Alignment:
Q  189 ttcaccaatttacactcactttcatcattcaaaatattgtttt---cttaaaagtttgtatttattacatgttttgtacc 265  Q
    ||||| ||||||||| || ||| ||||||| ||||||||||||   |||||||||||||   ||||||||||||| ||||    
T  24656510 ttcactaatttacacccatttttatcattccaaatattgttttttccttaaaagtttgttcatattacatgttttctacc 24656589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 35760308 - 35760252
Alignment:
Q  326 aaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||| || |||||||||| |||||||||||| |||||||| || | |||||||||    
T  35760308 aaattgcccttctatttaaatttaattagaatagaaacaaaaaggcgttttagtaaa 35760252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1532 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold1532
Description:

Target: scaffold1532; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 1555 - 1461
Alignment:
Q  188 tttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    |||||| |||||| ||||||||||||||||| ||||||||||| ||||| ||||||| ||||||| ||||||||||||||||| |||||||||||    
T  1555 tttcactaatttatactcactttcatcattccaaatattgtttccttaagagtttgtctttattatatgttttgtaccttaagaatgtcattgtc 1461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1532; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 1425 - 1361
Alignment:
Q  318 tagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    |||||| ||||||| || | ||||||||||||||||||||||||| ||||  ||| |||||||||    
T  1425 tagttataaaattgcccttttatttaaaattaattagaatataaataaaagagtgttttagtaaa 1361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 190 - 281
Target Start/End: Complemental strand, 452905 - 452814
Alignment:
Q  190 tcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgt 281  Q
    |||| |||||| || || ||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| |||||||||||    
T  452905 tcactaatttaaacccattttcatcattccaaatattgtttccttaaaagtttgtctctattacatgttttgtaccttaaacatgtcattgt 452814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 452777 - 452713
Alignment:
Q  318 tagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    ||||||||||| || || |||||||||| ||||||| |||| |||||||| |||| |||||||||    
T  452777 tagttacaaaactgcccttctatttaaatttaattaaaatagaaacaaaaaggtgttttagtaaa 452713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 280580 - 280486
Alignment:
Q  188 tttcaccaatttacactcactttcatcattcaaaatattgttttcttaaaagtttgtatttattacatgttttgtaccttaagcatgtcattgtc 282  Q
    |||||| ||||||||| |||||||||||||  ||||||| ||| ||||||||||| |  |||||||||||||||||| |||| ||||||||||||    
T  280580 tttcactaatttacacccactttcatcatttcaaatattatttccttaaaagtttttcgttattacatgttttgtactttaaacatgtcattgtc 280486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 280450 - 280386
Alignment:
Q  318 tagttacaaaattgtccctctatttaaaattaattagaatataaacaaaatggtgctttagtaaa 382  Q
    ||||||||||| || |  ||||||||||||||||||||||||||||||||||||| |||||||||    
T  280450 tagttacaaaactgccattctatttaaaattaattagaatataaacaaaatggtgttttagtaaa 280386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 367
Target Start/End: Original strand, 3538 - 3591
Alignment:
Q  314 aagctagttacaaaattgtccctctatttaaaattaattagaatataaacaaaa 367  Q
    |||||||| |||||| ||||  | ||||||||||||||||||||||||||||||    
T  3538 aagctagtaacaaaagtgtcattttatttaaaattaattagaatataaacaaaa 3591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 12735 - 12662
Alignment:
Q  62 aaacaaaagcaacaaactgaaactataacacaaccccgagcgcggaggttctcatcagttgacatctttccatg 135  Q
    ||||||||||||||||| || |||||||||||||||  ||  |||||||| ||||| || | |||||| |||||    
T  12735 aaacaaaagcaacaaacagagactataacacaacccttagtccggaggttttcatccgtgggcatcttaccatg 12662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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