View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20238_low_5 (Length: 255)
Name: NF20238_low_5
Description: NF20238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20238_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 38998914 - 38998682
Alignment:
| Q |
9 |
tcaacaaatggtttctcaatacttcaatcttgcttgtgcctcaagtaataacaattcaagaaagttgctaccatttctccatcttggtgcttctcatcaa |
108 |
Q |
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| T |
38998914 |
tcaacaaatggtttctcaatacttcaatcttgcttgtgcctcaagtaacaacaattcaagaaagttgctaccatttctccatcttggtgcttctcatcaa |
38998815 |
T |
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| Q |
109 |
cttgatgattatgaaatgatgactatgagttcgccagatgagaatcaggtggattcgatctctcccaatgaaagccttcagaattccggtttggtaagct |
208 |
Q |
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| T |
38998814 |
tttgatgattatgaaatgatgactatgagttcgccagatgagaatcaggtggattcgatctctcccaatgaaagccttcacaattccggtttggtaagct |
38998715 |
T |
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| Q |
209 |
ctactatcacaagcttaagcgacgatagaaact |
241 |
Q |
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| T |
38998714 |
ctactatcacaagcttaagcgacgatagaaact |
38998682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 32205218 - 32205426
Alignment:
| Q |
9 |
tcaacaaatggtttctcaatacttcaatcttgcttgtgcctcaagtaataac---aattcaagaaagttgctaccatttctccatcttggtgcttctcat |
105 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||| ||| |||| ||||||| | ||||| ||||| ||||||||||| | | |
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| T |
32205218 |
tcaacaaatggtttctgaatatttcaatcttgcttgtgcctcaagtaacaacaaaaattgaagaaagatactaccttttcttcatcttggtgcatgatag |
32205317 |
T |
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| Q |
106 |
caacttgatgattatgaaatgatgactatgagttcgccagatgagaatcaggtggattcgatctctcccaatgaaagccttcagaattccggtttggtaa |
205 |
Q |
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| T |
32205318 |
c-gttcaatgattatgaaatgatgactttgagttcaccagatgagaatcaagttgattccatct------atgaaagtgttcacagtttcggtttcgtaa |
32205410 |
T |
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| Q |
206 |
gctctactatcacaag |
221 |
Q |
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|||| ||||||||||| |
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| T |
32205411 |
gctcgactatcacaag |
32205426 |
T |
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