View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20238_low_7 (Length: 251)
Name: NF20238_low_7
Description: NF20238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20238_low_7 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 28029192 - 28029432
Alignment:
| Q |
10 |
tgagatgaataactagtacaccaggcggtgactgtaggcgcaacttgttcccggagcatcaaaactgcaggtttatgaacataagcattataaccattgt |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || |
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| T |
28029192 |
tgagatgaataactagtacaccaggcggtgactgtaggcgcaacttgttcccggagcatcaaaactgcaggtttatgaatataagcattgtaaccatggt |
28029291 |
T |
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| Q |
110 |
tattaaaacgagattcaaataacagaaaacctattctccaaatcgtgaaacaaatcttatcatgaattgtaagatacattaccaataaaaatataacatt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28029292 |
tattaaaacgagattcaaataacagaaaacctattcaccaaatcgtgaaacaaatcttatcatgaattgtaagatacattaccaataaaaatataacatt |
28029391 |
T |
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| Q |
210 |
ttaagtnnnnnnntatagatgtgccagaaaaatttgagcgga |
251 |
Q |
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|||||| |||| |||||||||||||||||||||||| |
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| T |
28029392 |
ttaagt-aaaaaatataaatgtgccagaaaaatttgagcgga |
28029432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 6430748 - 6430687
Alignment:
| Q |
138 |
acctattctccaaatcgtgaaacaaatcttatcatgaattgtaagatacattaccaataaaa |
199 |
Q |
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| T |
6430748 |
acctattttccaaatgatgaatcaaatcttattatgaatcataagatacattagcaataaaa |
6430687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 36826723 - 36826682
Alignment:
| Q |
162 |
aatcttatcatgaattgtaagatacattaccaataaaaatat |
203 |
Q |
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| T |
36826723 |
aatcttattatgaattataagatacattactaataaaaatat |
36826682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 5964181 - 5964234
Alignment:
| Q |
162 |
aatcttatcatgaattgtaagatacattaccaataaaaatataacattttaagt |
215 |
Q |
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| T |
5964181 |
aatcttattattaattgtaagatacattagcaataaaaatatgacattttaagt |
5964234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 7747070 - 7747122
Alignment:
| Q |
162 |
aatcttatcatgaattgtaagatacattaccaataaaaatataacattttaag |
214 |
Q |
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||||||| |||||| ||||||||||||| |||||||||||| |||||||||| |
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| T |
7747070 |
aatcttactatgaatcgtaagatacattatcaataaaaatatgacattttaag |
7747122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 7379775 - 7379739
Alignment:
| Q |
175 |
attgtaagatacattaccaataaaaatataacatttt |
211 |
Q |
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||||||||||||||||||||||||| ||| ||||||| |
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| T |
7379775 |
attgtaagatacattaccaataaaattatgacatttt |
7379739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 2578131 - 2578083
Alignment:
| Q |
165 |
cttatcatgaattgtaagatacattaccaataaaaatataacattttaa |
213 |
Q |
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||||| |||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
2578131 |
cttattatgaatagtaagatacattaccaataaaaatatgacattttaa |
2578083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 24188253 - 24188204
Alignment:
| Q |
162 |
aatcttatcatgaattgtaagatacattaccaataaaaatataacatttt |
211 |
Q |
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|||||||| ||||| |||||||||||||||||||||| ||||||||||| |
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| T |
24188253 |
aatcttattatgaaccgtaagatacattaccaataaaattataacatttt |
24188204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 19454251 - 19454177
Alignment:
| Q |
138 |
acctattctccaaatcgtgaaacaaatcttatcatgaattgtaagatacattaccaataaaaatataacatttta |
212 |
Q |
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|
||||||| ||| ||||||||| ||||||| ||||||||||||||||||| ||| ||||||||| ||||||| |
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| T |
19454251 |
acctattttccgaatcgtgaattgaatcttactatgaattgtaagatacattgccattaaaaatatgtcatttta |
19454177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 5912832 - 5912779
Alignment:
| Q |
150 |
aatcgtgaaacaaatcttatcatgaattgtaagatacattaccaataaaaatat |
203 |
Q |
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||||||||| | || |||| ||| |||||||||||||||| ||||||||||||| |
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| T |
5912832 |
aatcgtgaatcgaaacttagcatcaattgtaagatacattgccaataaaaatat |
5912779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 7295739 - 7295702
Alignment:
| Q |
162 |
aatcttatcatgaattgtaagatacattaccaataaaa |
199 |
Q |
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|||||||| ||||||||||||||||||||| ||||||| |
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| T |
7295739 |
aatcttattatgaattgtaagatacattactaataaaa |
7295702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 32117912 - 32117874
Alignment:
| Q |
162 |
aatcttatcatgaattgtaagatacattaccaataaaaa |
200 |
Q |
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|||||||| || ||||||||||||||||||||||||||| |
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| T |
32117912 |
aatcttattatcaattgtaagatacattaccaataaaaa |
32117874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 20553804 - 20553844
Alignment:
| Q |
173 |
gaattgtaagatacattaccaataaaaatataacattttaa |
213 |
Q |
| |
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|||| ||||||||||||||| |||||||||| ||||||||| |
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| T |
20553804 |
gaatcgtaagatacattaccgataaaaatatgacattttaa |
20553844 |
T |
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