View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20239_high_1 (Length: 565)
Name: NF20239_high_1
Description: NF20239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20239_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Original strand, 35354464 - 35355013
Alignment:
| Q |
1 |
attaaacattaatctatgttaagattttgactgtgtggcatttgcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35354464 |
attaaacattaatctatgttaagattttgactgtttggcatttgcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatat |
35354563 |
T |
|
| Q |
101 |
ttcctatagcctctaatttaccatggtggagaacagatggtgtgattcttacagtaatattgcatgctggaccagtggagtttttatactattggctaca |
200 |
Q |
| |
|
||||||| || ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35354564 |
ttcctatggcttctaacttaccatggtggagaatagatggtgtgattcttacagcaatattgcatgctggaccagtggagtttttatactattggcttca |
35354663 |
T |
|
| Q |
201 |
tagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaattgttactgagcctatcacttgtatgaacnnnnnnnnnnnn |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35354664 |
tagagcacttcatcatcattatctatactctcgttatcactctcatcaccattcttcaattgttactgagcctatcacttgtatgaactttttttctttc |
35354763 |
T |
|
| Q |
301 |
nnnnnngcatgcttgatttgtgagtgtccaaattttggtgtcaaaataacacaactttcttatgtattttgacagctgtgacacacccatttgcggagca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35354764 |
atttttgcatgcttgatttgtgagtgtccaaattttggtgtcaaaataacacaactttcttatgtattttgacagctgtgacacacccatttgcggagca |
35354863 |
T |
|
| Q |
401 |
tttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtggctgcactatttggctatatattttacattgat |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||| |
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|
| T |
35354864 |
tttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtggctgcactatatggctatgtctttttcattgat |
35354963 |
T |
|
| Q |
501 |
ttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaact |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35354964 |
ttcatgaacaacatgggtcattgcaactttgagttcattcctaagaaact |
35355013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 39 - 288
Target Start/End: Original strand, 35369647 - 35369896
Alignment:
| Q |
39 |
catttgcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatatttcctatagcctctaatttaccatggtggagaacagat |
138 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| |||| || ||||||||||||||||||||||| || ||||| |||||||||||||||| |||| |
|
|
| T |
35369647 |
catttgcagggatgaccaaattttgttcactgcactgttatactacataggatacatgatatttcctatggcttctaacttaccatggtggagaatagat |
35369746 |
T |
|
| Q |
139 |
ggtgtgattcttacagtaatattgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatc |
238 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35369747 |
ggtgtgattcttacagcaatattgcatgctggaccagtcgagtttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatc |
35369846 |
T |
|
| Q |
239 |
attctcatcaccattcttcaattgttactgagcctatcacttgtatgaac |
288 |
Q |
| |
|
||||||| || |||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
35369847 |
attctcaccatcattcttcaattgtcactgagcctgtcacttgtatgaac |
35369896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 40 - 288
Target Start/End: Original strand, 35379007 - 35379255
Alignment:
| Q |
40 |
atttgcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatatttcctatagcctctaatttaccatggtggagaacagatg |
139 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| ||||||| ||||| |||| | ||||||||||| || ||||| |||||||||||||||| ||||| |
|
|
| T |
35379007 |
atttgcagggatgatcaaatgttgttcactgtactcgtatattgtatagcatactttatatttcctatggcttctaacttaccatggtggagaatagatg |
35379106 |
T |
|
| Q |
140 |
gtgtgattcttacagtaatattgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatca |
239 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35379107 |
gtgtgattcttacagcaatattgcatgctggaccagtcgagtttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatca |
35379206 |
T |
|
| Q |
240 |
ttctcatcaccattcttcaattgttactgagcctatcacttgtatgaac |
288 |
Q |
| |
|
|||||| || |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35379207 |
ttctcaccatcattcttcaattgtcactgagcctatcacttgtatgaac |
35379255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 368 - 550
Target Start/End: Original strand, 35380837 - 35381019
Alignment:
| Q |
368 |
tttgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtg |
467 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
35380837 |
tttgacagctgtcgcacacccatttgcggagcatttgtcatattttacactttttgctatcccaatgttgacaacattgttcatcaataaatcttccgtg |
35380936 |
T |
|
| Q |
468 |
gctgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaact |
550 |
Q |
| |
|
|||||| | | ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35380937 |
gctgcattgtatggttatatattttacattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaagaaact |
35381019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 371 - 547
Target Start/End: Original strand, 35370278 - 35370454
Alignment:
| Q |
371 |
gacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtggct |
470 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
35370278 |
gacagctgtggcacacccatttgccgagcatttgtcatattttacactttttgctataccaatgttaacaacattgttcatcaaaaaatcatctgtggct |
35370377 |
T |
|
| Q |
471 |
gcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaa |
547 |
Q |
| |
|
||||||| ||||||| | |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35370378 |
gcactatatggctatgtctttttcattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaagaa |
35370454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 8e-84; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 19684048 - 19684317
Alignment:
| Q |
19 |
ttaagattttgactgtgtggcatttgcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatatttcctatagcctctaatt |
118 |
Q |
| |
|
|||||||||| | |||||| |||||||||||||||||||||||||||||||||| || | | ||||||| |||| |||||||||||| || | || | |
|
|
| T |
19684048 |
ttaagattttcattgtgtgacatttgcagggatgatcaaatattgttcactgcattaatgttttatatactttacacgatatttcctatggctgccaact |
19684147 |
T |
|
| Q |
119 |
taccatggtggagaacagatggtgtgattcttacagtaatattgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcacca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
19684148 |
taccatggtggagaacagatggtgtgattcttacagctatcttgcatgctggaccagtggagttcttatactattggctacatagagcacttcatcatca |
19684247 |
T |
|
| Q |
219 |
ttatctatactctcgttatcattctcatcaccattcttcaattgttactgagcctatcacttgtatgaac |
288 |
Q |
| |
|
||||||||| |||||||| |||||||| || |||||||||||||| ||||| ||||||||| |||||||| |
|
|
| T |
19684248 |
ttatctatattctcgttaccattctcaccatcattcttcaattgtcactgaacctatcactggtatgaac |
19684317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 19630749 - 19630480
Alignment:
| Q |
19 |
ttaagattttgactgtgtggcatttgcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatatttcctatagcctctaatt |
118 |
Q |
| |
|
|||||||||| | | |||| ||||||||||||||||||||||||||| ||||||||| | |||||| ||||| ||||||||||| || |||| | |
|
|
| T |
19630749 |
ttaagattttcattatgtgacatttgcagggatgatcaaatattgttgactgcactaaccttctatatactatacacaatatttcctatggctgctaact |
19630650 |
T |
|
| Q |
119 |
taccatggtggagaacagatggtgtgattcttacagtaatattgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcacca |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
19630649 |
taccatggtggagaacagatggtgtggttcttacagctctcttgcatgctggaccagtggagttcttatactattggctacatagagcacttcatcatca |
19630550 |
T |
|
| Q |
219 |
ttatctatactctcgttatcattctcatcaccattcttcaattgttactgagcctatcacttgtatgaac |
288 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
19630549 |
ttatctatactctcgttaccattctcatcatcattcttcaattgtcaccgagcctatcacttgtatgaac |
19630480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 370 - 550
Target Start/End: Original strand, 19684483 - 19684663
Alignment:
| Q |
370 |
tgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtggc |
469 |
Q |
| |
|
||||||| |||||||| |||||||| ||| ||| ||||||| ||||||||| ||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
19684483 |
tgacagcggtgacacatccatttgctgagatgttggcatatttcacactttttcttataccaatgttgacaacattgttcatgaaaaaatcgagtgtggt |
19684582 |
T |
|
| Q |
470 |
tgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaact |
550 |
Q |
| |
|
|||| | | ||| ||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19684583 |
tgcattgtatggttatatcttttacatcgattttatgaacaacatgggtcattgcaattttgagttctttcctaagaaact |
19684663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 370 - 550
Target Start/End: Complemental strand, 19630344 - 19630163
Alignment:
| Q |
370 |
tgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttga-caacattgttcatcaaaaaatcttctgtgg |
468 |
Q |
| |
|
|||||||||||| |||||||||||| ||| ||| ||||||| ||||||||| ||| ||||| |||| ||||| ||||| | |||||||| ||| | | |
|
|
| T |
19630344 |
tgacagctgtgatacacccatttgctgagatattggcatatttcacacttttttttatcccaatattgagcaacaatgttcgtaaaaaaatcgtctattg |
19630245 |
T |
|
| Q |
469 |
ctgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaact |
550 |
Q |
| |
|
|||| | | ||| ||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19630244 |
ctgcggtgtatggttatatcttttacatcgattttatgaacaacatgggtcattgcaattttgagttctttcctaagaaact |
19630163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 168 - 266
Target Start/End: Complemental strand, 2258558 - 2258460
Alignment:
| Q |
168 |
tggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaattgttac |
266 |
Q |
| |
|
|||||||||||||||| | ||||||||| |||| |||||||||||||| |||| || || ||| | |||||||||||||| |||||||| |||||||| |
|
|
| T |
2258558 |
tggaccagtggagtttctttactattggttacacagagcacttcatcatcatttcctctattctagatatcattctcatcatcattcttccattgttac |
2258460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 163 - 266
Target Start/End: Complemental strand, 2280553 - 2280450
Alignment:
| Q |
163 |
catgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaattg |
262 |
Q |
| |
|
||||||||| |||| || ||| | || |||||| |||| |||||||||||||| |||| || || ||| | |||||||||||||| |||||||| |||| |
|
|
| T |
2280553 |
catgctggagcagttgaatttctttattattggttacacagagcacttcatcatcatttcctctattctagatatcattctcatcatcattcttccattg |
2280454 |
T |
|
| Q |
263 |
ttac |
266 |
Q |
| |
|
|||| |
|
|
| T |
2280453 |
ttac |
2280450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 548
Target Start/End: Original strand, 2251396 - 2251453
Alignment:
| Q |
491 |
ttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaa |
548 |
Q |
| |
|
|||||||||||||||||| || ||||||| || || ||||||||| ||||||||||| |
|
|
| T |
2251396 |
ttacattgatttcatgaataatttgggtcactgtaattttgagttcattcctaagaaa |
2251453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 548
Target Start/End: Complemental strand, 2256801 - 2256744
Alignment:
| Q |
491 |
ttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaa |
548 |
Q |
| |
|
|||||||||||||||||| || ||||||| || || ||||||||| ||||||||||| |
|
|
| T |
2256801 |
ttacattgatttcatgaataatttgggtcactgtaattttgagttcattcctaagaaa |
2256744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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