View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20239_high_11 (Length: 275)
Name: NF20239_high_11
Description: NF20239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20239_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 22 - 263
Target Start/End: Complemental strand, 19751472 - 19751232
Alignment:
| Q |
22 |
tgttaaacctgcaaaactgtaactcggtattagttaacttgagcattaagctacactattactatagtgtatcgtacataaagtgagtaatctaaccata |
121 |
Q |
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| T |
19751472 |
tgttaaacctgcaaaactgtaactcggtattagttaacttgagcttta-gctacactattactatagtgtatggtacatagagtgagtaatctaaccata |
19751374 |
T |
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| Q |
122 |
tagtagttagtgccagctgttaattggtaggaagatctaatagctagttagaacaatgacttctaaatatagatgaaatgtaacaaactcgacacaattc |
221 |
Q |
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| T |
19751373 |
tagtagttagtgccagctgttaattggtaggaagatctaatagctagttagaacaatgacttctatatatagatgaaatgtaacaaactcgacacaattc |
19751274 |
T |
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| Q |
222 |
gataaacagttttcattatctcagatttcttcttcttcccta |
263 |
Q |
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| T |
19751273 |
gataaacagttttcattttctcagatttcttcttcttcccta |
19751232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 257
Target Start/End: Complemental strand, 1820390 - 1820277
Alignment:
| Q |
141 |
ttaattggtaggaagatctaatagctagttagaacaatgacttctaaatatagatgaaatgtaacaaactcgacacaattcgataaacagttttcattat |
240 |
Q |
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||||||||| ||||||||||| | |||||||||| || ||||| |||||||| || ||||||||||| ||||||||||||||||| |||| ||| | |
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| T |
1820390 |
ttaattggttggaagatctaa--gttagttagaactataggttctatatatagatcaaccgtaacaaactcaacacaattcgataaaca-ttttaatttt |
1820294 |
T |
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| Q |
241 |
ctcagatttcttcttct |
257 |
Q |
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|| |||||||||||||| |
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| T |
1820293 |
ctgagatttcttcttct |
1820277 |
T |
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