View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20239_high_2 (Length: 494)
Name: NF20239_high_2
Description: NF20239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20239_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 16 - 474
Target Start/End: Complemental strand, 37783359 - 37782895
Alignment:
| Q |
16 |
aatatataggcagagatagcaacaagtaagagctgaagaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaacaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37783359 |
aatatataggcagagatagcaacaagtaagagctgaagaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaacaa |
37783260 |
T |
|
| Q |
116 |
tcactaatccagaggctacaattccctgcagtaacattcacttgcatttaacaactacattcgaacctttaatttaacacat-----atatatatgaagg |
210 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
37783259 |
tcactaatccagaggctacaattccctgcaataacattcacttgcatttaacaactacattcgaacctttaatataacacatatatgatatatatgaagg |
37783160 |
T |
|
| Q |
211 |
gagtaaaattcttgtaaattccactaaatttacttgtgtcccagtctaaagtaga-nnnnnnnngtctctatgttgtaaataattagaaaatgcattgtc |
309 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| |
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| T |
37783159 |
gagtaaaattcttgtaaattccactaaatttacgtgtgtcccagtctaaagtagatttttttttgtctctatgttgtaaaaaattagaaaaagcattgtc |
37783060 |
T |
|
| Q |
310 |
caatatatatttctcaaatttttgttcatatttgaatctacctatctcaaataaaaaacttgaagtggtttgattgattgagtttctacgagcataccga |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37783059 |
caatatatatttctcaaatttttgttcatatttgaatctacctatctcaaataaaaaacttgaattggtttgattgattgagtttctacgagcataccga |
37782960 |
T |
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| Q |
410 |
ataagcaatagtaagaagtctgatatcgtaaccgagcttccattgattccaatctctatcgatac |
474 |
Q |
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| T |
37782959 |
ataagcaatagtaagaagtctgatatcgtaaccgagcttccattgattccaatctctatcgatac |
37782895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 37808598 - 37808448
Alignment:
| Q |
21 |
ataggcagagatagcaacaagtaagagctgaagaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaacaatcact |
120 |
Q |
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||||||| ||| ||| |||||||| |||||||||||||||||| |||| ||||| |||||| |||||| |||| |||||||||||||||| || |||| |
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| T |
37808598 |
ataggcaaagacagctacaagtaaaagctgaagaggattgaaaacagacacaaatagaggacccctcatccttatacaccaagaaataacaataaccact |
37808499 |
T |
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| Q |
121 |
aatccagaggctacaattccctgcagtaacattcacttgcatttaacaact |
171 |
Q |
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| T |
37808498 |
gacccagagaccacaataccctgcattaacattcacatacatttaacaact |
37808448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 396 - 471
Target Start/End: Complemental strand, 37808350 - 37808275
Alignment:
| Q |
396 |
tacgagcataccgaataagcaatagtaagaagtctgatatcgtaaccgagcttccattgattccaatctctatcga |
471 |
Q |
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| T |
37808350 |
tacgagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcga |
37808275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 37803885 - 37803798
Alignment:
| Q |
25 |
gcagagatagcaacaagtaagagctgaagaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaa |
112 |
Q |
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||||||| ||| |||||||| || |||||||||| |||| |||| | ||| | ||| |||||||||||||||||||||| |||||||| |
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| T |
37803885 |
gcagagacagccacaagtaaaagttgaagaggatagaaaacagaggcaaagagagggcctctcatctttatgcaccaagcaataacaa |
37803798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 142
Target Start/End: Complemental strand, 37792503 - 37792398
Alignment:
| Q |
37 |
acaagtaagagctgaagaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaacaatcactaatccagaggctacaa |
136 |
Q |
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||||||| ||| |||||||||| |||| |||| | ||| | ||| |||||||||||||||||||| | |||||||| | | || |||||||||||||| |
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| T |
37792503 |
acaagtaggagttgaagaggatagaaaacagaggcaaaaagagggcctctcatctttatgcaccaggcaataacaatagtagttattccagaggctacaa |
37792404 |
T |
|
| Q |
137 |
ttccct |
142 |
Q |
| |
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|||||| |
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| T |
37792403 |
ttccct |
37792398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 1213982 - 1214066
Alignment:
| Q |
52 |
agaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaacaatcactaatccagaggctacaa |
136 |
Q |
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| T |
1213982 |
agagggttgaagacagatgcaaataaaggtcccctcatctttatgcaccacgaagtcacaataaccactaatccagaggcaacaa |
1214066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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