View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20239_high_3 (Length: 457)
Name: NF20239_high_3
Description: NF20239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20239_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 436
Target Start/End: Original strand, 3018100 - 3018516
Alignment:
| Q |
19 |
gttaaatgaaaaatttaaaaagatttaaatgatttctcttctttgagaaaccattgtaacactttaagagaatgggtcactgtgattttataaatgtcac |
118 |
Q |
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| T |
3018100 |
gttaaatgaaaaatttaaaaagatttaaatgatttctcttctttgagaaaccattgtaacactttaagagaatgggtcactgtaattttataaatgtcac |
3018199 |
T |
|
| Q |
119 |
actcgctgaaaatataccaaactagcnnnnnnnnnnn---aacgtagaattgaattatcctatctagcttcagaaaattcatgtgaatttgggacatggg |
215 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
3018200 |
actcgctgaaaatataccaaactaggttttttttttttttaacgtagaattgaattatcctatctagcttca-----ttcatgtcaatttgggacatggg |
3018294 |
T |
|
| Q |
216 |
aaactagaatgcagcatatgctcaataacttttacaatttcagtgttaccaaaagaactaaaatgagtgtttgctctttaaaattgtgtcgcattggaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3018295 |
aaactagaatgcagcatatgctcaataacttttacaatttcagtgtcaccaaaagaactaaaatgagtgtttgctctttaaaattgtgtcgcattggaac |
3018394 |
T |
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| Q |
316 |
atcctaaagcctaagctgtagagctagtga-nnnnnnnngtgaaacatagtaatctaataatatcaagccaatcattgtataactaatgatttagaggct |
414 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3018395 |
atcctaaagcctaagctgtagagctagtgatttttttttgtgaaacatagtaatctaataatatcaagccaatcattgtataactaatgatttagaggct |
3018494 |
T |
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| Q |
415 |
ttggtaatttccacactaaatt |
436 |
Q |
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|||||||||||||||||||||| |
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| T |
3018495 |
ttggtaatttccacactaaatt |
3018516 |
T |
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