View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20239_low_10 (Length: 369)
Name: NF20239_low_10
Description: NF20239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20239_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 12 - 351
Target Start/End: Complemental strand, 45746763 - 45746424
Alignment:
| Q |
12 |
atgaaggtgaatgttaaatatcatgttccattttcttttaaaaatctgcactcgcgatctgagttgtggcattaaggtttttaatgtctccacaacaagg |
111 |
Q |
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| T |
45746763 |
atgaaggtgaatgttaaatatcatgttccattttcttttaaaaatctgcagtcgcgatctgagttgcggcattaaggtttttaatgtctccacaacaagg |
45746664 |
T |
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| Q |
112 |
ttgcctaagctgcttttgtttgtgattctccataatatcaaagattacaaatttgatttaaaaacttgttaaacacaacagttattgcatttgtattaat |
211 |
Q |
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| T |
45746663 |
ttgcctaagccgcttttgtttgtgattctccataatatcaaagattacaaatgtgatttaaaaacttgttaaacacaacagttattgcatttgtattaat |
45746564 |
T |
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| Q |
212 |
atagatactgtaatttgtaacaattaactgactttgtttttgttgaatcagactcaactggaaaggcatgagaacataatgcttaggcaggaaaatgaca |
311 |
Q |
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| T |
45746563 |
atagatactgtaatttgtaacaattaactgactttgtttttgttgaatcagactcaactggaaaggcatgagaacataatgcttaggcaggaaaatgaca |
45746464 |
T |
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| Q |
312 |
agctaagaggggagaatagcatgatgaaagaagcaatggt |
351 |
Q |
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| T |
45746463 |
agctaagaggggagaatagcatgatgaaagaagcaatggt |
45746424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 329
Target Start/End: Complemental strand, 12326930 - 12326862
Alignment:
| Q |
261 |
agactcaactggaaaggcatgagaacataatgcttaggcaggaaaatgacaagctaagaggggagaata |
329 |
Q |
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| T |
12326930 |
agactcaattggaaaggcatgagaacaatttgcttaggcaagagaatgataagcttagagctgagaata |
12326862 |
T |
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