View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20239_low_5 (Length: 453)

Name: NF20239_low_5
Description: NF20239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20239_low_5
NF20239_low_5
[»] chr2 (1 HSPs)
chr2 (1-438)||(32897671-32898098)
[»] chr4 (1 HSPs)
chr4 (333-430)||(45058997-45059094)
[»] chr3 (2 HSPs)
chr3 (333-434)||(11462890-11462991)
chr3 (390-430)||(29103136-29103176)
[»] chr6 (2 HSPs)
chr6 (352-429)||(3893374-3893451)
chr6 (352-433)||(10317623-10317704)
[»] chr7 (4 HSPs)
chr7 (352-433)||(32991200-32991281)
chr7 (351-429)||(2919446-2919524)
chr7 (396-432)||(25851231-25851267)
chr7 (396-432)||(25852093-25852129)


Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 32898098 - 32897671
Alignment:
Q  1 ccattaacatgtaaatgatgtgtctagattgatttattctctgcagtaatcattcatctcaaaaagtacaaaaaatcctaatcgagataaatcatcaaca 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32898098 ccattaacatgtaaatgatgtgtcaagattgattaattctctgcagtaatcattcatctcaaaaagtacaaaaaatcctaatcgagataaatcatcaaca 32897999  T
Q  101 ttgataaatgaaaccaatgcatatacaagcctattaagaaaaacaagattccacctatctctcatagtcttttgaaaggatcaaaatgcggctcatatgc 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32897998 ttgataaatgaaaccaatgcatatacaagcctattaagcaaaacaagattccacctatctctcatagtcttttgaaaggatcaaaatgcggctcatatac 32897899  T
Q  201 aaacaattacaacaaagtgctacactacaaagcacttgagaacacttgaaattcactaaattaaaatagctatgatgaagaaatgaaagaaaaattagta 300  Q
    ||| |||||||||||||| |||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32897898 aaataattacaacaaagtactacactacaa----------aacacttgaaattcactaaattaaaatagctatgatgaagaaatgaaagaaaaattagta 32897809  T
Q  301 ccttagagtttctagagaggaagtgataagcaaattttccttcaaggcgatattcatgcataacccagttacttttttcacctttaggagctcttcctct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32897808 ccttagagtttctagagaggaagtgataagcaaattttccttcaaggcgatattcatgcataacccagttacttttttcacctttaggagctcttcctct 32897709  T
Q  401 atagaaaacaagggttttcttcataccaacaagagagt 438  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32897708 atagaaaacaagggttttcttcataccaacaagagagt 32897671  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 45059094 - 45058997
Alignment:
Q  333 aattttccttcaaggcgatattcatgcataacccagttacttttttcacctttaggagctcttcctctatagaaaacaagggttttcttcataccaac 430  Q
    ||||| || ||||| |||||||||||||| ||||| ||||||||||| |||||||| ||||||||| | ||||||||||| |||||||||||||||||    
T  45059094 aatttaccctcaagtcgatattcatgcatgacccaattacttttttctcctttaggtgctcttcctttgtagaaaacaagagttttcttcataccaac 45058997  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 434
Target Start/End: Original strand, 11462890 - 11462991
Alignment:
Q  333 aattttccttcaaggcgatattcatgcataacccagttacttttttcacctttaggagctcttcctctatagaaaacaagggttttcttcataccaacaa 432  Q
    ||||| || ||||| | |||||||||||| ||||| |||||||| || |||||||| ||||||||| | ||||||||||| ||||||||||| |||||||    
T  11462890 aatttaccctcaagtctatattcatgcattacccaattacttttctctcctttaggtgctcttcctttgtagaaaacaagagttttcttcattccaacaa 11462989  T
Q  433 ga 434  Q
    ||    
T  11462990 ga 11462991  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 430
Target Start/End: Complemental strand, 29103176 - 29103136
Alignment:
Q  390 gctcttcctctatagaaaacaagggttttcttcataccaac 430  Q
    ||||||||||||||| |||| |||||||||||||| |||||    
T  29103176 gctcttcctctatagtaaactagggttttcttcattccaac 29103136  T

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Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 352 - 429
Target Start/End: Complemental strand, 3893451 - 3893374
Alignment:
Q  352 attcatgcataacccagttacttttttcacctttaggagctcttcctctatagaaaacaagggttttcttcataccaa 429  Q
    |||||||||| ||||| ||  |||||||||||||||||||||||||| | ||||||||||| ||||||||||| ||||    
T  3893451 attcatgcatgacccaatttgttttttcacctttaggagctcttcctttgtagaaaacaagtgttttcttcattccaa 3893374  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 433
Target Start/End: Original strand, 10317623 - 10317704
Alignment:
Q  352 attcatgcataacccagttacttttttcacctttaggagctcttcctctatagaaaacaagggttttcttcataccaacaag 433  Q
    |||||||||| ||||| ||  |||| || ||| | |||||||| ||| ||||||| ||||| ||||||||||||||||||||    
T  10317623 attcatgcatgacccaattggttttctctcctcttggagctctacctttatagaacacaagagttttcttcataccaacaag 10317704  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 433
Target Start/End: Complemental strand, 32991281 - 32991200
Alignment:
Q  352 attcatgcataacccagttacttttttcacctttaggagctcttcctctatagaaaacaagggttttcttcataccaacaag 433  Q
    |||||||||||||||| ||| | || || ||||| |||||||||||| ||||||| ||||| || |||||||||||||||||    
T  32991281 attcatgcataacccaattagtcttctctccttttggagctcttcctttatagaacacaagagtcttcttcataccaacaag 32991200  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 429
Target Start/End: Complemental strand, 2919524 - 2919446
Alignment:
Q  351 tattcatgcataacccagttacttttttcacctttaggagctcttcctctatagaaaacaagggttttcttcataccaa 429  Q
    ||||||||||| ||||||||   |||||||||| | |||||||||||| | |||||||| || ||||| ||||| ||||    
T  2919524 tattcatgcatgacccagttggatttttcacctctcggagctcttcctatgtagaaaactagtgtttttttcatcccaa 2919446  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 432
Target Start/End: Complemental strand, 25851267 - 25851231
Alignment:
Q  396 cctctatagaaaacaagggttttcttcataccaacaa 432  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  25851267 cctctgtagaaaacaagagttttcttcataccaacaa 25851231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 432
Target Start/End: Original strand, 25852093 - 25852129
Alignment:
Q  396 cctctatagaaaacaagggttttcttcataccaacaa 432  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  25852093 cctctgtagaaaacaagagttttcttcataccaacaa 25852129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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