View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20239_low_6 (Length: 427)
Name: NF20239_low_6
Description: NF20239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20239_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 15 - 410
Target Start/End: Original strand, 40632785 - 40633180
Alignment:
| Q |
15 |
aatattgttaaagccgtgcaatattttgatgagatgttgagttctggatgctcaccagatacaattgtttactatagtttgatatctagtttaaccattg |
114 |
Q |
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| T |
40632785 |
aatattgttaaagccgtgcaatattttgatgagatgttgagttctggatgctcaccagatacaattgtttactatagtttgatatctagtttaaccattg |
40632884 |
T |
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| Q |
115 |
ctagaaggatggatttgtcacagttgaaacaagttgggctgggtcttgatagaacttgctactatgctcttttaagtggattccgtaagaagaagaagct |
214 |
Q |
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| T |
40632885 |
ctagaaggatggatttgtcacagttgaaacaagttgggctgggtcttgatagaacttgctactatgctcttttaagtggattccgtaagaagaagaagct |
40632984 |
T |
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| Q |
215 |
agaacaagtatctgaaatgctcaacaagatggaagaaattgaagttaagcctgatactgtcacttacaatactttagtttcttaccttggcaaagctgga |
314 |
Q |
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| T |
40632985 |
agaacaagtatctgaaatgctcaacaagatggaagaaattgaagttaagcctgatactgtcacttacaatactttagtttcttaccttggcaaagctgga |
40633084 |
T |
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| Q |
315 |
gattttgcaaccgctaccaagatgatgaaagagatgattgaagagggttttgagccatctgttttcacatatggggcaattatacatgcatattgt |
410 |
Q |
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| T |
40633085 |
gattctgcaaccgctaccaagatgatgaaagagatgattgaagagggttttgagccatctgttttcgcatatggggcaattatacatgcatattgt |
40633180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 41236928 - 41236521
Alignment:
| Q |
18 |
attgttaaagccgtgcaatattttgatgagatgttgagttctggatgctcaccagatacaattgtttactatagtttgatatctagtttaaccattgcta |
117 |
Q |
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| T |
41236928 |
attgataaagccatgcaatattttgatgagatgttgagttctggatgctcaccggatgcaattgtttactattgtttgatatctggtttaaccattgctg |
41236829 |
T |
|
| Q |
118 |
gaaggatggatt---------------tgtcacagttgaaacaagttgggctgggtcttgatagaacttgctactatgctcttttaagtggattccgtaa |
202 |
Q |
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| T |
41236828 |
gaaggatgggtgatgctagtgttgttgtgtcgcagttgaaacgggctgggtttggccttgatagacattgctataatgttctcatcagtggattctgcaa |
41236729 |
T |
|
| Q |
203 |
gaagaagaagctagaacaagtatctgaaatgctcaacaagatggaagaaattgaagttaagcctgatactgtcacttacaatactttagtttcttacctt |
302 |
Q |
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| T |
41236728 |
gaagaagaagctggagcgagtttatgaaatgctcaacgaaatggaagaaaatggagtcaagcccgacattgtcacctataacactttggtttcttacctt |
41236629 |
T |
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| Q |
303 |
ggcaaagctggagattttgcaaccgctaccaagatgatgaaagagatgattgaagagggttttgagccatctgttttcacatatggggcaattatacatg |
402 |
Q |
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||||||||||||||||||||||| ||||||||| | |||||| |||||||| |||||||| || |||| |||||| |||||||||||||| | ||||||| |
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| T |
41236628 |
ggcaaagctggagattttgcaactgctaccaaggtaatgaaaaagatgattaaagagggtcttaagccctctgttgtcacatatggggcagtcatacatg |
41236529 |
T |
|
| Q |
403 |
catattgt |
410 |
Q |
| |
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|||||||| |
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| T |
41236528 |
catattgt |
41236521 |
T |
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