View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2023_high_1 (Length: 543)
Name: NF2023_high_1
Description: NF2023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2023_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 20 - 530
Target Start/End: Complemental strand, 16917137 - 16916631
Alignment:
| Q |
20 |
gtagattcaactattaatttcttgtctttcatttttgtttctgttatgttttaaagaaattcaattttgtgcgaataattggttattgatcaagttgcaa |
119 |
Q |
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| T |
16917137 |
gtagattcaactattaatttcttgtctttcatttttgtttctgttatgttttaaagaaattaaattttgtgcaaataattggttattgatcaagttgcaa |
16917038 |
T |
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| Q |
120 |
cttcatcactaatatgattcaatagcagaaacatagnnnnnnnnnnaatgtgaatatatgatttaatagcagaatcagagtttttatgtgaatttcaaag |
219 |
Q |
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| T |
16917037 |
cttcgtcactaatatgattcaatagcagaaacatagttttttt----atgtgaatatatgatttaatagcagaatcagagtttttatgtgaatttcaaag |
16916942 |
T |
|
| Q |
220 |
aagacaacaaaaaaccattgtatgtttcaaatgatacannnnnnnnggtctcctatgccaattccatttgtgcatcaatgatgattgatttcaggatagg |
319 |
Q |
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| T |
16916941 |
aagacaacaaaaaactattgtatgtttcaaatgatacattttctttggtcttctatgccaattccatttgtgcatcaatgatgattgatttcaggatagg |
16916842 |
T |
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| Q |
320 |
aattatgaagactaacaaggcttccccaccctgcatctaaggctgcgagaataacgagtaagccttccaacataagatccaggcttagctttgatcatgt |
419 |
Q |
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| T |
16916841 |
aattatgaagactaacaaggcttccccaccctgcatctaaggctgcgagaataacgagtaagccttccaacataagatccaggcttagctttgatcatgt |
16916742 |
T |
|
| Q |
420 |
ccttatttgagaatggtctgttagtcagctcagctccgctttgtctgaaaaatgctccgttcaggtacaagtcgttgattgatctccattgccaggtttt |
519 |
Q |
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| T |
16916741 |
ccttatttgagaatggtctgttaatcagctcagctccgctttgtctgaaaaatgctccgttcaggtacaagtcgttgattgatctccattgccaggtttt |
16916642 |
T |
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| Q |
520 |
ccactctgcct |
530 |
Q |
| |
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| T |
16916641 |
ccactctgcct |
16916631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 283 - 523
Target Start/End: Complemental strand, 16912475 - 16912235
Alignment:
| Q |
283 |
ccatttgtgcatcaatgatgattgatttcaggataggaattatgaagactaacaaggcttccccaccctgcatctaaggctgcgagaataacgagtaagc |
382 |
Q |
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||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||| ||||||||||||| | |||||||||||||||| |
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| T |
16912475 |
ccatttgtgcatcaatgatgattgatttcaggaagggaattttgaagactaacaaggtttccccactatgcatctaaggcttccagaataacgagtaagc |
16912376 |
T |
|
| Q |
383 |
cttccaacataagatccaggcttagctttgatcatgtccttatttgagaatggtctgttagtcagctcagctccgctttgtctgaaaaatgctccgttca |
482 |
Q |
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| T |
16912375 |
cttccaacataagttccgggcctagatttgatcatgtcctttcttgagaatggtctgtctttcaactcaggtcctccttgtctgaaaaatgctccgttca |
16912276 |
T |
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| Q |
483 |
ggtacaagtcgttgattgatctccattgccaggttttccac |
523 |
Q |
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| T |
16912275 |
ggtacacgtcgttgattgatctccattgccaggatttccac |
16912235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 490 - 522
Target Start/End: Original strand, 25006399 - 25006431
Alignment:
| Q |
490 |
gtcgttgattgatctccattgccaggttttcca |
522 |
Q |
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| T |
25006399 |
gtcgttgattgatctccattgccaggttttcca |
25006431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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