View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2023_high_4 (Length: 377)

Name: NF2023_high_4
Description: NF2023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2023_high_4
NF2023_high_4
[»] chr5 (4 HSPs)
chr5 (24-369)||(13879872-13880217)
chr5 (231-306)||(13875730-13875805)
chr5 (239-297)||(13885860-13885918)
chr5 (244-297)||(13870759-13870812)
[»] chr8 (5 HSPs)
chr8 (16-56)||(39433399-39433439)
chr8 (17-59)||(20469344-20469386)
chr8 (17-54)||(15310313-15310350)
chr8 (17-54)||(15490682-15490719)
chr8 (17-54)||(34997449-34997486)
[»] chr3 (4 HSPs)
chr3 (14-58)||(29687069-29687113)
chr3 (17-54)||(37413488-37413525)
chr3 (14-47)||(40962720-40962753)
chr3 (14-58)||(38330782-38330826)
[»] scaffold0768 (1 HSPs)
scaffold0768 (17-54)||(6422-6459)
[»] chr6 (1 HSPs)
chr6 (17-54)||(6833469-6833506)
[»] chr7 (1 HSPs)
chr7 (7-48)||(30781449-30781492)
[»] chr1 (1 HSPs)
chr1 (24-56)||(26834509-26834541)


Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 24 - 369
Target Start/End: Complemental strand, 13880217 - 13879872
Alignment:
Q  24 atatcaactgagctaagctcacgagcacaaataaaagtagactttattcaataatgcattgtctcatgatttttacataaataaatgttgaaatttatta 123  Q
    ||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  13880217 atatcaactgaactaagctcacgagcagaaataagagtagactttattcaataatgcgt-gtctcatgatttttacataaataaatgttgaaatttatta 13880119  T
Q  124 actactaatccgatagactatgaggagtgattaactctaaaaaa-gaaaagaactaaatgaattaaaaatgatgaatgaactaagttatatggtgagagt 222  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13880118 actactaatccgatagactatgaggagtgattaactctaaaaaaagaaaagaactaaatgaattaaaaatgatgaatgaactaagttatatggtgagagt 13880019  T
Q  223 gattcaatgaaaaagtgacacgtcactaagcaaagtctcttgatagccaagttagtatccttctagaacattcttaagccatttttcactacaaaaaccc 322  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13880018 aattcaatgaaaaagtgacacgtcactaagcaaagtctcttgatagccaagttagtatccttctagaacattctaaagccatttttcactacaaaaaccc 13879919  T
Q  323 taaaagcaagcgataaagagagaaagcaatcccaagaaaatctcact 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  13879918 taaaagcaagcgataaagagagaaagcaatcccaagaaaatctcact 13879872  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 13875805 - 13875730
Alignment:
Q  231 gaaaaagtgacacgtcactaagcaaagtctcttgatagccaagttagtatccttctagaacattcttaagccattt 306  Q
    ||||| |||||||||||| || ||||||  |||| || ||||||||||||||||||||||||||||||||||||||    
T  13875805 gaaaacgtgacacgtcacaaaacaaagtggcttggtaaccaagttagtatccttctagaacattcttaagccattt 13875730  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 297
Target Start/End: Complemental strand, 13885918 - 13885860
Alignment:
Q  239 gacacgtcactaagcaaagtctcttgatagccaagttagtatccttctagaacattctt 297  Q
    ||||||||||||||||||||  |||| |||||||| ||||||||||||||||| |||||    
T  13885918 gacacgtcactaagcaaagtggcttggtagccaaggtagtatccttctagaaccttctt 13885860  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 13870812 - 13870759
Alignment:
Q  244 gtcactaagcaaagtctcttgatagccaagttagtatccttctagaacattctt 297  Q
    |||| ||||||||||  |||| |||||||||||||||| ||||||||| |||||    
T  13870812 gtcagtaagcaaagtggcttggtagccaagttagtatcattctagaaccttctt 13870759  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 39433439 - 39433399
Alignment:
Q  16 tattgtttatatcaactgagctaagctcacgagcacaaata 56  Q
    ||||||| ||||||||||||||||||||||||| |||||||    
T  39433439 tattgttcatatcaactgagctaagctcacgaggacaaata 39433399  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 20469344 - 20469386
Alignment:
Q  17 attgtttatatcaactgagctaagctcacgagcacaaataaaa 59  Q
    |||||||||| ||||||| ||||||||||||| ||||||||||    
T  20469344 attgtttataccaactgatctaagctcacgagaacaaataaaa 20469386  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 15310350 - 15310313
Alignment:
Q  17 attgtttatatcaactgagctaagctcacgagcacaaa 54  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  15310350 attgtctatatcaactgagctaagctcacgaggacaaa 15310313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 15490719 - 15490682
Alignment:
Q  17 attgtttatatcaactgagctaagctcacgagcacaaa 54  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  15490719 attgtctatatcaactgagctaagctcacgaggacaaa 15490682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 34997486 - 34997449
Alignment:
Q  17 attgtttatatcaactgagctaagctcacgagcacaaa 54  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  34997486 attgtctatatcaactgagctaagctcacgaggacaaa 34997449  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 29687113 - 29687069
Alignment:
Q  14 tatattgtttatatcaactgagctaagctcacgagcacaaataaa 58  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||    
T  29687113 tatattgtccatatcaactgagctaagctcacgaggacaaataaa 29687069  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 37413525 - 37413488
Alignment:
Q  17 attgtttatatcaactgagctaagctcacgagcacaaa 54  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  37413525 attgtctatatcaactgagctaagctcacgaggacaaa 37413488  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 40962753 - 40962720
Alignment:
Q  14 tatattgtttatatcaactgagctaagctcacga 47  Q
    ||||||||||||| ||||||||||||||||||||    
T  40962753 tatattgtttatagcaactgagctaagctcacga 40962720  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 38330782 - 38330826
Alignment:
Q  14 tatattgtttatatcaactgagctaagctcacgagcacaaataaa 58  Q
    ||||||||||||| ||| ||||||||||||||||  |||||||||    
T  38330782 tatattgtttataccaattgagctaagctcacgaagacaaataaa 38330826  T

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Target: scaffold0768 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0768
Description:

Target: scaffold0768; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 6422 - 6459
Alignment:
Q  17 attgtttatatcaactgagctaagctcacgagcacaaa 54  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  6422 attgtctatatcaactgagctaagctcacgagtacaaa 6459  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 6833506 - 6833469
Alignment:
Q  17 attgtttatatcaactgagctaagctcacgagcacaaa 54  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  6833506 attgtctatatcaactgagctaagctcacgagtacaaa 6833469  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 30781492 - 30781449
Alignment:
Q  7 ttatttttat--attgtttatatcaactgagctaagctcacgag 48  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||    
T  30781492 ttatttttatgcattgtctatatcaactgagctaagctcacgag 30781449  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 26834541 - 26834509
Alignment:
Q  24 atatcaactgagctaagctcacgagcacaaata 56  Q
    ||||||||||||||||||||||||| |||||||    
T  26834541 atatcaactgagctaagctcacgaggacaaata 26834509  T

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