View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2023_high_6 (Length: 364)
Name: NF2023_high_6
Description: NF2023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2023_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 37771085 - 37771229
Alignment:
| Q |
17 |
ttatagaaaatgttacagagtgctcttaaaacattgtttnnnnnnntagaaatattgtgtcgaggaataatgaaaaatgatgaattctactttttaaaag |
116 |
Q |
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| T |
37771085 |
ttataggaaatattacagagtgttcttaagacattgtttaaaaaaatagaaatattgtgtcgaggaatagtgaaaaatgatgaattctactttttaaaag |
37771184 |
T |
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| Q |
117 |
taaaaaattgtttattctaatataaaactactacttttaatttcc |
161 |
Q |
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| T |
37771185 |
taaaaaattgtttattctaatataaaactactacatttaatttcc |
37771229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 226 - 328
Target Start/End: Original strand, 37771294 - 37771396
Alignment:
| Q |
226 |
caagacatttaatgattcaatgtcaggtaccagtaattggattgggtccggctcttcgaggagttgttatctttttctttgacttgttccttggctgtgt |
325 |
Q |
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| T |
37771294 |
caagatatttaatgattcaatgtcaggtaccagtaattggattgggtccggctcttcgaggagttgttatctttttctttgacttgttccttggctgtgt |
37771393 |
T |
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| Q |
326 |
ttt |
328 |
Q |
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||| |
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| T |
37771394 |
ttt |
37771396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 55465513 - 55465578
Alignment:
| Q |
89 |
aaaaatgatgaattctactttttaaaagtaaaaaattgtttattctaatataaaactactactttt |
154 |
Q |
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| T |
55465513 |
aaaaatgatgaattcaacattttaaaagtttaaaattgtagtttctaatataaaactactattttt |
55465578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 8210210 - 8210158
Alignment:
| Q |
87 |
tgaaaaatgatgaattctactttttaaaag-taaaaaattgtttattctaata |
138 |
Q |
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| T |
8210210 |
tgaaaaatgatgaattcaactttttaaaagttaaaaaattgttgtttctaata |
8210158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 154
Target Start/End: Original strand, 31596470 - 31596537
Alignment:
| Q |
87 |
tgaaaaatgatgaattctactttttaaaagt-aaaaaattgtttattctaatataaaactactactttt |
154 |
Q |
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|||||||||||||||| |||||||||||||| |||| |||||| | |||| |||| || |||||||||| |
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| T |
31596470 |
tgaaaaatgatgaattttactttttaaaagtcaaaatattgttaaatctattatataa-tactactttt |
31596537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 40335046 - 40334976
Alignment:
| Q |
89 |
aaaaatgatgaattctactttttaaaagtaaaaaattgtttattctaatataaaactactacttttaattt |
159 |
Q |
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| T |
40335046 |
aaaagtgatgaatttaactttttaaaagaaaaaaattattgattcaaatgtaaaattactatttttaattt |
40334976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 34835925 - 34835849
Alignment:
| Q |
86 |
atgaaaaatgatgaattctactttttaaaag-taaaaaattgtttattctaatataaaactactacttttaatttcc |
161 |
Q |
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||||||||||| ||||| |||||||||||| ||||| |||||| | | |||||||| ||||||||||||||||| |
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| T |
34835925 |
atgaaaaatgaagaatttaactttttaaaagttaaaatattgttaaattcaatataaatatactacttttaatttcc |
34835849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 17403006 - 17402940
Alignment:
| Q |
89 |
aaaaatgatgaattctactttttaaaagtaaaaa-attgtttattctaatataaaactactactttt |
154 |
Q |
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|||| ||||||||| ||||||||||||| |||| |||||| | |||||| |||||||||||||||| |
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| T |
17403006 |
aaaagtgatgaatttaactttttaaaagtcaaaatattgttgaatctaatgtaaaactactactttt |
17402940 |
T |
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