View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2023_high_7 (Length: 344)
Name: NF2023_high_7
Description: NF2023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2023_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 37593492 - 37593806
Alignment:
| Q |
12 |
acagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593492 |
acagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg |
37593591 |
T |
|
| Q |
112 |
gcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593592 |
gcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatt |
37593691 |
T |
|
| Q |
212 |
tgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaacttcaagaaat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593692 |
tgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaacttcaagaaat |
37593791 |
T |
|
| Q |
312 |
aaacagtgagacaaa |
326 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
37593792 |
gaacagtgagacaaa |
37593806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 37695883 - 37696197
Alignment:
| Q |
12 |
acagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg |
111 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37695883 |
acagaatcattatagtaataaccgtcacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg |
37695982 |
T |
|
| Q |
112 |
gcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37695983 |
gcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatt |
37696082 |
T |
|
| Q |
212 |
tgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaacttcaagaaat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37696083 |
tgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaacttcaagaaat |
37696182 |
T |
|
| Q |
312 |
aaacagtgagacaaa |
326 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
37696183 |
gaacagtgagacaaa |
37696197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 326
Target Start/End: Original strand, 37532387 - 37532702
Alignment:
| Q |
11 |
cacagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgtt |
110 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
37532387 |
cacagaatcattatagtaataacccgcacccttgtattgcaaaccaatttggctgtcattcacattcatcattcctttaaagttcttgatgcatgatatt |
37532486 |
T |
|
| Q |
111 |
ggcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattat |
210 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37532487 |
ggcaagggcccactaaaattgttgttagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattat |
37532586 |
T |
|
| Q |
211 |
ttgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaacttcaagaaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37532587 |
ttgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaacttcaagaaa |
37532686 |
T |
|
| Q |
311 |
taaacagtgagacaaa |
326 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
37532687 |
tgaacagtgagacaaa |
37532702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 318
Target Start/End: Original strand, 37823192 - 37823498
Alignment:
| Q |
12 |
acagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg |
111 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37823192 |
acagaatcattgtagtaataagagtcacccatgtattgcaaaccaatttggtcgtcactcacattcatcattccttgaaagttcttgatgcatgatgttg |
37823291 |
T |
|
| Q |
112 |
gcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatt |
211 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37823292 |
gcaagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatt |
37823391 |
T |
|
| Q |
212 |
tgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaacttcaagaaat |
311 |
Q |
| |
|
||||||||| |||| || ||||||||| |||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||||||||| || |
|
|
| T |
37823392 |
tgatcgtaaacttatcacctgtaactctggtagagtttctagccaatcaggaaatgtatcctcaacgttgttgtcaccaaggtccaaaacttcaagatat |
37823491 |
T |
|
| Q |
312 |
aaacagt |
318 |
Q |
| |
|
|||||| |
|
|
| T |
37823492 |
gaacagt |
37823498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 318
Target Start/End: Complemental strand, 37401870 - 37401564
Alignment:
| Q |
12 |
acagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg |
111 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37401870 |
acagaatcattgtagtaataagagtcacccatgtattgcaaaccagtgttattgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg |
37401771 |
T |
|
| Q |
112 |
gcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatt |
211 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37401770 |
gcaagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatt |
37401671 |
T |
|
| Q |
212 |
tgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaacttcaagaaat |
311 |
Q |
| |
|
||||||||| |||| || ||||||||| |||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||||||||| || |
|
|
| T |
37401670 |
tgatcgtaaacttatcacctgtaactctggtagagtttctagccaatcaggaaatgtatcctcaacgttgttgtcaccaaggtccaaaacttcaagatat |
37401571 |
T |
|
| Q |
312 |
aaacagt |
318 |
Q |
| |
|
|||||| |
|
|
| T |
37401570 |
gaacagt |
37401564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 318
Target Start/End: Original strand, 37639034 - 37639340
Alignment:
| Q |
12 |
acagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg |
111 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639034 |
acagaatcattgtagtaataagagtcacccatgtattgcaaaccagtgttattgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg |
37639133 |
T |
|
| Q |
112 |
gcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatt |
211 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37639134 |
gcaagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatt |
37639233 |
T |
|
| Q |
212 |
tgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaacttcaagaaat |
311 |
Q |
| |
|
||||||||| |||| || ||||||||| |||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||||||||| || |
|
|
| T |
37639234 |
tgatcgtaaacttatcacctgtaactctggtagagtttctagccaatcaggaaatgtatcctcaacgttgttgtcaccaaggtccaaaacttcaagatat |
37639333 |
T |
|
| Q |
312 |
aaacagt |
318 |
Q |
| |
|
|||||| |
|
|
| T |
37639334 |
gaacagt |
37639340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 38 - 318
Target Start/End: Complemental strand, 37393723 - 37393443
Alignment:
| Q |
38 |
acccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgata |
137 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| || |
|
|
| T |
37393723 |
acccatgtattgcaaaccaatttggctgttattcacatccatcattccttgaaagttcttgaagcatgatgttggcaaggggccactaaaattgttacta |
37393624 |
T |
|
| Q |
138 |
gaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatttgatcgtaagcttagaacttgtaact |
237 |
Q |
| |
|
|| |||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| |||||||||||| ||||| || ||||||| |
|
|
| T |
37393623 |
gagacatcataaattctcaacttaggaaatggatgcttggtgctagaacatgtgattgacccatgaagatgatttgatcgtaaacttagcacctgtaact |
37393524 |
T |
|
| Q |
238 |
cttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaacttcaagaaataaacagt |
318 |
Q |
| |
|
|||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||||| || |||||| |
|
|
| T |
37393523 |
cttgtagagtttctagccaattgggaaaagtatcctctatgttgttgtcaccaaggtccaatacttcaagatatgaacagt |
37393443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 64 - 308
Target Start/End: Original strand, 37702023 - 37702267
Alignment:
| Q |
64 |
tgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttagg |
163 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
37702023 |
tgtcatttacattaatcattccttgaaagttcttgatgcatgatgttggcaaggggccactaaaattgttgttagaggcatcaaaaattctcaacttagg |
37702122 |
T |
|
| Q |
164 |
aaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatttgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttgga |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || || || ||||||||| ||| ||||||||||||||| ||| |
|
|
| T |
37702123 |
aaatgaatgcttggtgctagaacaagtgattgcaccatgaagatgatttgatcgtaaactcagcacctgtaactctggtaaagtttctagccaattggga |
37702222 |
T |
|
| Q |
264 |
aatgtgtcctctatgttgttgtcaccaaggtccaaaacttcaaga |
308 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37702223 |
aatgtatcctctatgttgttgtcaccaaggtccaatacttcaaga |
37702267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 43 - 318
Target Start/End: Original strand, 37710823 - 37711098
Alignment:
| Q |
43 |
tgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgatagaaac |
142 |
Q |
| |
|
||||||||| | |||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || |
|
|
| T |
37710823 |
tgtattgcagatcaatttttttgtcattcaccttcatcattccttgaaagttcttgatgcatgatgctggcaagggcccactaaaattgttgttagagac |
37710922 |
T |
|
| Q |
143 |
atcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatttgatcgtaagcttagaacttgtaactcttgt |
242 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||| || ||||||||| || |
|
|
| T |
37710923 |
atcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttatcacctgtaactctggt |
37711022 |
T |
|
| Q |
243 |
agagtttctagccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaacttcaagaaataaacagt |
318 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
37711023 |
agagtttctagccaatcaggaaatgtatcctcaacgttgttgtcaccaaggtccaaaacttcaagatatgaacagt |
37711098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 11 - 304
Target Start/End: Complemental strand, 37383199 - 37382906
Alignment:
| Q |
11 |
cacagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgtt |
110 |
Q |
| |
|
|||||||||||||||||||| | |||| |||||||||||||| | | |||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
37383199 |
cacagaatcattatagtaattggacttacccatgtattgcaaaccagtgttattgtcattcacattcatcattccttgaaaattcttgatgcacgatgtt |
37383100 |
T |
|
| Q |
111 |
ggcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattat |
210 |
Q |
| |
|
|||||||||||| ||||||||||| |||| |||||||||||||||||||| ||||||| ||| ||||||||||| || |||||||| |||||||| |||| |
|
|
| T |
37383099 |
ggcaagggcccaataaaattgttgttagagacatcaaaaattctcaacttgggaaatggatgtttggtgctagagcatgtgattgcgccatgaagtttat |
37383000 |
T |
|
| Q |
211 |
ttgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaacttc |
304 |
Q |
| |
|
|||||| ||| || || || ||||| |||||||||||||| |||||||| ||||| || ||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
37382999 |
ttgatcttaaactgagcacctgtaattcttgtagagtttcaagccaattgggaaaagtatcctctacgttgttgtctccaaggtccaaaacttc |
37382906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 37434997 - 37435286
Alignment:
| Q |
11 |
cacagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgtt |
110 |
Q |
| |
|
|||||||||||||||||||| | |||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37434997 |
cacagaatcattatagtaattgttcttacccatgtattgcaaaccaatctggctatcattcacattcatcattccttgaaagttcttgatacatgatgtt |
37435096 |
T |
|
| Q |
111 |
ggcaagggcccactaaaattgttgatagaa-acatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagatta |
209 |
Q |
| |
|
||||||| |||||||||||||| | ||| | ||||||||||| ||||||| ||| | ||| |||||| ||||||| ||||||| ||||| ||| ||| |
|
|
| T |
37435097 |
ggcaaggatccactaaaattgtt-accgaagatgtcaaaaattcttaacttagaaaaaggatggttggtgttagaacaggtgattgaaccattaagttta |
37435195 |
T |
|
| Q |
210 |
tttgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaa |
300 |
Q |
| |
|
||||||| ||| || || || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
37435196 |
tttgatcttaaactgagtacctgtaactcttgtagagtttctagccaattgggaaatgtatcctctatgttgttgtatccaaggtccaaaa |
37435286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 139 - 308
Target Start/End: Complemental strand, 37413910 - 37413741
Alignment:
| Q |
139 |
aaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatttgatcgtaagcttagaacttgtaactc |
238 |
Q |
| |
|
|||||| ||| ||||||||||| ||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
37413910 |
aaacataaaatattctcaacttgggaaatgtatgctttgtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttagcacctgtaactc |
37413811 |
T |
|
| Q |
239 |
ttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaacttcaaga |
308 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
37413810 |
ttgtagagtttctagccaattgggaaatgtatcctctatattgttgtcaccaaggtccagaacttcaaga |
37413741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 37428339 - 37428543
Alignment:
| Q |
11 |
cacagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgtt |
110 |
Q |
| |
|
|||||||||||||||||||| || |||| |||| ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| ||| |
|
|
| T |
37428339 |
cacagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtc |
37428438 |
T |
|
| Q |
111 |
ggcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattat |
210 |
Q |
| |
|
|||||||| ||||||||| | || || | | || |||||||||||||| || |||| ||| ||||| ||||||||||||||| |||||| || |||| |
|
|
| T |
37428439 |
ggcaagggaccactaaaaattttattatagatgtcgaaaattctcaactt-gggaatggatgtttggtcatagaacaagtgattgtaccatgcagtttat |
37428537 |
T |
|
| Q |
211 |
ttgatc |
216 |
Q |
| |
|
|||||| |
|
|
| T |
37428538 |
ttgatc |
37428543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 26437679 - 26437767
Alignment:
| Q |
80 |
cattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatg |
168 |
Q |
| |
|
|||||||| |||||| |||||| | | ||| ||||| | ||||||||||| ||| | || |||||||||| |||||||||||||||| |
|
|
| T |
26437679 |
cattcctttaaagtttttgatgtacgttgtgggcaaagagccactaaaattattgttggagacatcaaaaaccctcaacttaggaaatg |
26437767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 26451048 - 26451136
Alignment:
| Q |
80 |
cattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatg |
168 |
Q |
| |
|
|||||||| |||||| |||||| | | ||| ||||| | ||||||||||| ||| | || |||||||||| |||||||||||||||| |
|
|
| T |
26451048 |
cattcctttaaagtttttgatgtacgttgtgggcaaagagccactaaaattattgttggagacatcaaaaaccctcaacttaggaaatg |
26451136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 38 - 321
Target Start/End: Original strand, 14552686 - 14552969
Alignment:
| Q |
38 |
acccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgata |
137 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
14552686 |
acccatgtattgcaaaccaatttggctgtcattcacgttcatcattccttgaaagttcttgatgcatgatgttggcaaggtgccactaaaattgttgtta |
14552785 |
T |
|
| Q |
138 |
gaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatttgatcgtaagcttagaacttgtaact |
237 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||| || ||||||| |||||||||||| ||||| |||||||||| |
|
|
| T |
14552786 |
gagacatcaaaaattctcaacttaggaaatgaatgcttgatgctagaacaggtgattgctccgtgaagatgatttgatcgtaaacttagcacttgtaact |
14552885 |
T |
|
| Q |
238 |
cttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaacttcaagaaataaacagtgag |
321 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||| || ||||||||| | ||||||||| |
|
|
| T |
14552886 |
cttgtagagtttctagccaattgggaaatgtatcctctatgctgttgtcaccaaggtctaatacttcaagatttgaacagtgag |
14552969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 43 - 326
Target Start/End: Complemental strand, 16843837 - 16843554
Alignment:
| Q |
43 |
tgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgatagaaac |
142 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| || |
|
|
| T |
16843837 |
tgtattgcaaaccaatctggctatcatccacattcatcattccttgaaagttctggatgcatgatgttggcaaggtgccactaaaattgttgttagagac |
16843738 |
T |
|
| Q |
143 |
atcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatttgatcgtaagcttagaacttgtaactcttgt |
242 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||| |||||||| || || |||||||||||| |
|
|
| T |
16843737 |
atcaaaaattctcaacttaggaaatggatgcttggtgctagaacaagtgattactccatgaagattattagatcgtaaaacgagtacctgtaactcttgt |
16843638 |
T |
|
| Q |
243 |
agagtttctagccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaacttcaagaaataaacagtgagacaaa |
326 |
Q |
| |
|
|||||||| |||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
16843637 |
agagtttcaagccaactgggaaatgtatcctctatgttgttgtcaccaaggtccaaaacttcaagatatgaacagtgagacaaa |
16843554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 11 - 318
Target Start/End: Complemental strand, 16846536 - 16846230
Alignment:
| Q |
11 |
cacagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgtt |
110 |
Q |
| |
|
|||||||||||||||||||| || ||| |||| ||||||||| ||| | |||||| | ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
16846536 |
cacagaatcattatagtaattgacctttcccatgtactgcaaaccagttttattatcattcgcgttcatcattccttgaaaattcttgatacatgatgtt |
16846437 |
T |
|
| Q |
111 |
ggcaagggcccactaaaattgttgatagaa-acatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagatta |
209 |
Q |
| |
|
||||| || ||||| || ||||| || ||| | || ||||||||||| || ||||||| |||||||||||||||||| ||||||| ||||| ||| ||| |
|
|
| T |
16846436 |
ggcaacggtccactgaatttgtt-atcgaagatgtccaaaattctcaattt-ggaaatggatgcttggtgctagaacatgtgattgaaccataaagttta |
16846339 |
T |
|
| Q |
210 |
tttgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaacttcaagaa |
309 |
Q |
| |
|
||||| | ||| || || || |||||||||||||||||||| |||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16846338 |
tttgaccttaaactgagtacatgtaactcttgtagagtttcaagccaactgggaaatgtatcctctatgttgttgtcaccaaggtccaaaacttcaagat |
16846239 |
T |
|
| Q |
310 |
ataaacagt |
318 |
Q |
| |
|
|| |||||| |
|
|
| T |
16846238 |
atgaacagt |
16846230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 24218604 - 24218308
Alignment:
| Q |
11 |
cacagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgtt |
110 |
Q |
| |
|
||||||||||||||| |||| || |||| |||||||||||||| || || |||||||||| |||||||||||||| ||||||| ||| |||||| |
|
|
| T |
24218604 |
cacagaatcattataataattggccttacccatgtattgcaaaccagatttattgacattcacattaatcattccttgaaaattcttgaggcaagatgtt |
24218505 |
T |
|
| Q |
111 |
ggcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattat |
210 |
Q |
| |
|
|||| ||| |||| ||||| || ||| ||||| ||||||||| ||| |||||||| || ||||||||||||||||||||| |||||||||||| || |
|
|
| T |
24218504 |
ggcacggggccacggaaattattaccagagacatcgtaaattctcatcttcggaaatgattgtttggtgctagaacaagtgattccaccatgaagatgat |
24218405 |
T |
|
| Q |
211 |
ttgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaacttcaag |
307 |
Q |
| |
|
|||||||||| || || || ||||||||||| ||| ||||| |||||| |||||||| || | |||| ||||||| |||||||||||||||||||| |
|
|
| T |
24218404 |
ttgatcgtaaactgagtacctgtaactcttgcagaacttctaaccaattgggaaatgtatcgtttatgatgttgtctccaaggtccaaaacttcaag |
24218308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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