View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2023_high_9 (Length: 328)
Name: NF2023_high_9
Description: NF2023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2023_high_9 |
 | |
|
| [»] chr5 (14 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 10 - 328
Target Start/End: Original strand, 41337514 - 41337832
Alignment:
| Q |
10 |
acatcatcaggggttgtgataagggcgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaa |
109 |
Q |
| |
|
||||| ||||| ||||| || |||||||||| |||||| ||||||| |||| |||||||| ||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
41337514 |
acatcgtcaggaattgtgctatgggcgatgtcggagatgataaagaacccaatagtaatggaagaagcacaagttgaggtaagaagagtgtttgataaaa |
41337613 |
T |
|
| Q |
110 |
aggggtatgtggatgagacagagttgaatcagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactccc |
209 |
Q |
| |
|
|||||||||| || |||||||||||| | ||||| ||||||||| ||| |||||||||||||| | |||||||||||| ||| ||| ||||| | || |
|
|
| T |
41337614 |
aggggtatgtagacgagacagagttgcaacagttgacatacttaaagtgtgtcatcaaagaaacatttaggctacatcctactgtacctttgttggttcc |
41337713 |
T |
|
| Q |
210 |
aagagaaagtagggagagttgccaaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtat |
309 |
Q |
| |
|
|||||||||||| ||||| || ||||||||| |||||| || ||||||||||| |||||| |||||||| |||||| |||||||||||| |||||||| |
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|
| T |
41337714 |
aagagaaagtagagagagatgtgaaatcaatgggtatgagatcccagctaagacaagggttgctgtcaatgtttgggcaattggaagagatccaaagtat |
41337813 |
T |
|
| Q |
310 |
tgggttgaagctgagagtt |
328 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
41337814 |
tgggttgaagctgagagtt |
41337832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 32 - 328
Target Start/End: Original strand, 41328796 - 41329092
Alignment:
| Q |
32 |
gggcgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgtggatgagacaga |
131 |
Q |
| |
|
||||||||||||||||| | ||||| |||||||||||||| ||||||||| ||| ||||| ||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
41328796 |
gggcgatgtctgagatggtgaagaacccaaaggtaatggaagaagcacaagatgaagtaagtagagtgtttgataaaaaggagtatgtggatgagacaga |
41328895 |
T |
|
| Q |
132 |
gttgaatcagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactcccaagagaaagtagggagagttgc |
231 |
Q |
| |
|
|||| | || || |||||||||| | |||||||||||||| | ||| | ||||| || |||||||||| | |||||||||||||||||||| ||| |
|
|
| T |
41328896 |
gttgcaccaattgatatacttaaagtccgtcatcaaagaaacattgaggttgcatcccgttgcaccattgttagttccaagagaaagtagggagagatgc |
41328995 |
T |
|
| Q |
232 |
caaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtattgggttgaagctgagagtt |
328 |
Q |
| |
|
|||||||||| |||||| || ||||||||||| ||||| || || ||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41328996 |
caaatcaatgggtatgaaatcccagctaagacaagggtaatggttaatgcttgggctattggaagagattcaaggtattgggttgaagctgagagtt |
41329092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 32 - 328
Target Start/End: Original strand, 41324819 - 41325115
Alignment:
| Q |
32 |
gggcgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgtggatgagacaga |
131 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||| ||||| ||||||||| ||||||||||||||| ||||| | ||||||| ||||||||||||||| |
|
|
| T |
41324819 |
gggcgatatctgagatggtaaagaatccaaaggtgatggaagaagcacaagctgaggtaagaagagtttttgataggaaggggtttgtggatgagacaga |
41324918 |
T |
|
| Q |
132 |
gttgaatcagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactcccaagagaaagtagggagagttgc |
231 |
Q |
| |
|
|||| | || || |||||||||||| | | ||||| |||||| | ||||||||||| | | ||| |||||||| |||||||||||||||||||| ||| |
|
|
| T |
41324919 |
gttgcaccaattgatatacttaaaatctgtgatcaaggaaacaatgaggctacatccaaccgtaccgttgttacttccaagagaaagtagggagagatgc |
41325018 |
T |
|
| Q |
232 |
caaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtattgggttgaagctgagagtt |
328 |
Q |
| |
|
|||||||||| |||||| || ||||||||||| ||||| || || ||||||||||| |||||||||||| ||| |||||||||||| ||||| |||| |
|
|
| T |
41325019 |
caaatcaatgggtatgaaatcccagctaagacaagggtcatggttaatgcttgggctattggaagagatccaaggtattgggttgatgctgaaagtt |
41325115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 32 - 328
Target Start/End: Original strand, 41332729 - 41333025
Alignment:
| Q |
32 |
gggcgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgtggatgagacaga |
131 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||| |||| |||||||| | ||| ||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
41332729 |
gggcgatgtctgagatggtaaagaacccaaaggtattggaagaagcacagattgaagtaagaagagtgtttgataaaaaggggtatgtggatgagtcaga |
41332828 |
T |
|
| Q |
132 |
gttgaatcagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactcccaagagaaagtagggagagttgc |
231 |
Q |
| |
|
|||| | || || |||||||||| | | || ||||||||||| | ||| ||||||| || |||||||||| | ||||||||||||| | || ||| |
|
|
| T |
41332829 |
gttgcaccaattgatatacttaaagtctgtcgtcaaagaaacattgaggttacatcccgttgcaccattgttaattccaagagaaagtatgaagccatgc |
41332928 |
T |
|
| Q |
232 |
caaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtattgggttgaagctgagagtt |
328 |
Q |
| |
|
||||| |||| |||||| || ||||||||||| ||||| || || ||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41332929 |
caaattaatgggtatgaaatcccagctaagacaagggtaatggttaatgcttgggctattggaagagattcaaggtattgggttgaagctgagagtt |
41333025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 328
Target Start/End: Original strand, 41316733 - 41317051
Alignment:
| Q |
10 |
acatcatcaggggttgtgataagggcgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaa |
109 |
Q |
| |
|
||||| |||| || |||||| |||||||||||| |||| |||| || |||| |||||||| |||||||| ||| ||||||||||||||||| |||| |
|
|
| T |
41316733 |
acatcgtcagaggctgtgatttgggcgatgtctgcgatggtaaaaaactcaaatgtaatggaacaagcacaagctgaagtaagaagagtgtttgataaaa |
41316832 |
T |
|
| Q |
110 |
aggggtatgtggatgagacagagttgaatcagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactccc |
209 |
Q |
| |
|
|||| ||||||||||||||||||||| | || || |||||||||| | | |||||||||||||| | ||| | ||||| || ||||||||| | || |
|
|
| T |
41316833 |
agggatatgtggatgagacagagttgtaccaattgatatacttaaagtctgtcatcaaagaaacattgaggttgtatcctgttgctccattgttagttcc |
41316932 |
T |
|
| Q |
210 |
aagagaaagtagggagagttgccaaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtat |
309 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| |||||||| ||||| |||||| ||||||||||||||| |||||||||||| ||| |||| |
|
|
| T |
41316933 |
aagagaaagtagggagagatgccaaatcaatggttatgagattccagccaagacaagggttgctgtcaatgcttgggctattggaagagatccaaggtat |
41317032 |
T |
|
| Q |
310 |
tgggttgaagctgagagtt |
328 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
41317033 |
tgggttgaagctgagagtt |
41317051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 200 - 328
Target Start/End: Original strand, 41305235 - 41305363
Alignment:
| Q |
200 |
tgttactcccaagagaaagtagggagagttgccaaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagaga |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41305235 |
tgttactcccaagagaaagtagggagagttgccaaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagaga |
41305334 |
T |
|
| Q |
300 |
ttcaaagtattgggttgaagctgagagtt |
328 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
|
|
| T |
41305335 |
tccaaagtattgggttgaagctgagagtt |
41305363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 10 - 325
Target Start/End: Original strand, 41286900 - 41287214
Alignment:
| Q |
10 |
acatcatcaggggttgtgataagggcgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaa |
109 |
Q |
| |
|
||||| ||||||| |||| || | | ||||||||||||| |||||||||||||||| ||||| |||||||| ||||||||||||||||||||| | || |
|
|
| T |
41286900 |
acatcgtcaggggctgtgttatgagggatgtctgagatggtaaagaatccaaaggtgatggaa-aagcacaagctgaggtaagaagagtgtttgatagaa |
41286998 |
T |
|
| Q |
110 |
aggggtatgtggatgagacagagttgaatcagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactccc |
209 |
Q |
| |
|
|||||||||||| ||||||||||||| | || || ||||||| || | | | |||||||||||| | ||| | |||||| || ||||||||| | || |
|
|
| T |
41286999 |
aggggtatgtggttgagacagagttgcaccaattgatatacttgaagtctgttatcaaagaaacaatgaggttgcatcctgctataccattgttgattcc |
41287098 |
T |
|
| Q |
210 |
aagagaaagtagggagagttgccaaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtat |
309 |
Q |
| |
|
||||||||||| | || |||||||| |||| |||||||| || || |||||||||||| |||||||||||||||| |||||||||||| ||| ||| |
|
|
| T |
41287099 |
aagagaaagtatgaagccatgccaaattaatggatatgatatcccggccaagactagggttcttgtcaatgcttgggcaattggaagagatccaagatat |
41287198 |
T |
|
| Q |
310 |
tgggttgaagctgaga |
325 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
41287199 |
tgggtcgaagctgaga |
41287214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 10 - 328
Target Start/End: Complemental strand, 31178103 - 31177785
Alignment:
| Q |
10 |
acatcatcaggggttgtgataagggcgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaa |
109 |
Q |
| |
|
||||||||||| |||||| || ||| ||| ||||||||| ||||||| |||||| ||||| | ||||||||| ||| ||||||| ||||||||| |||| |
|
|
| T |
31178103 |
acatcatcaggagttgtgttatgggggatatctgagatgataaagaacccaaagataatgaaggaagcacaagctgaagtaagaaaagtgtttgataaaa |
31178004 |
T |
|
| Q |
110 |
aggggtatgtggatgagacagagttgaatcagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactccc |
209 |
Q |
| |
|
||||| |||| ||||| ||||||||| | || || |||||||||| | ||| |||||||||||| ||||| | |||||| || ||| ||||| | || |
|
|
| T |
31178003 |
aggggcatgtcgatgaaacagagttgcaccatttgatatacttaaagtctataatcaaagaaacattaaggttgcatccttctttacctttgttgattcc |
31177904 |
T |
|
| Q |
210 |
aagagaaagtagggagagttgccaaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtat |
309 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| |||||| || |||||||| || || ||| | |||||| |||||| |||||||||||| || |||| |
|
|
| T |
31177903 |
aagagaaagtagagagagatgccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaaggtat |
31177804 |
T |
|
| Q |
310 |
tgggttgaagctgagagtt |
328 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
31177803 |
tgggcagaagctgagagtt |
31177785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 10 - 328
Target Start/End: Complemental strand, 31188166 - 31187848
Alignment:
| Q |
10 |
acatcatcaggggttgtgataagggcgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaa |
109 |
Q |
| |
|
||||| || |||| |||| || ||| ||| ||||||||| ||||||| |||||| ||||||| |||||||| ||| ||||||| ||||||||| |||| |
|
|
| T |
31188166 |
acatcgtccggggctgtgctatgggggatatctgagatggtaaagaacccaaagataatggagaaagcacaagctgaagtaagaaaagtgtttgataaaa |
31188067 |
T |
|
| Q |
110 |
aggggtatgtggatgagacagagttgaatcagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactccc |
209 |
Q |
| |
|
|||||||||| ||||| ||||||||| | || || |||||||||| | ||| |||| ||||||| | |||||||||||| ||| || ||||| | || |
|
|
| T |
31188066 |
aggggtatgtcgatgaaacagagttgcaccaattgatatacttaaagtctataatcagagaaacattgaggctacatccttctgtgcctttgttggttcc |
31187967 |
T |
|
| Q |
210 |
aagagaaagtagggagagttgccaaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtat |
309 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| |||||| || |||||||| || || ||| | |||||| |||||| |||||||||||| || |||| |
|
|
| T |
31187966 |
aagagaaagtagagagagatgccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaaggtat |
31187867 |
T |
|
| Q |
310 |
tgggttgaagctgagagtt |
328 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
31187866 |
tgggcagaagctgagagtt |
31187848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 35 - 317
Target Start/End: Original strand, 41366911 - 41367193
Alignment:
| Q |
35 |
cgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgtggatgagacagagtt |
134 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||||||| | ||||||| ||||||||||||||||||||| |||||||| |||||| ||||||||||||| |
|
|
| T |
41366911 |
cgatgtctgagatggtaaagaatccgatggtaatggaagcagcacaagttgaggtaagaagagtgtttgataaaaagggatatgtgaatgagacagagtt |
41367010 |
T |
|
| Q |
135 |
gaatcagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactcccaagagaaagtagggagagttgccaa |
234 |
Q |
| |
|
| | || || |||||||||||| |||||||||||||| | ||| | |||||| || |||||| || | ||||||||||||| | || |||||| |
|
|
| T |
41367011 |
gcaccaattgatatacttaaaatccgtcatcaaagaaacaatgaggttgcatccttctataccattattgattccaagagaaagtacgaagccatgccaa |
41367110 |
T |
|
| Q |
235 |
atcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtattgggttga |
317 |
Q |
| |
|
|| ||| |||||||| ||||||||||| ||||| ||||| ||||||||||| |||||||||||| | | |||||||||||| |
|
|
| T |
41367111 |
ataaatagatatgatatcccagctaagacaagggtcattgttaatgcttgggctattggaagagatccgaggtattgggttga |
41367193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 43 - 326
Target Start/End: Original strand, 41310967 - 41311254
Alignment:
| Q |
43 |
gagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaagggg----tatgtggatgagacagagttgaat |
138 |
Q |
| |
|
|||||| ||||||| |||||||||||||| ||||||||| ||| ||||||||||||||||| ||||||||| ||||||||||||| |||||| | |
|
|
| T |
41310967 |
gagatggtaaagaacccaaaggtaatggaagaagcacaagttgaagtaagaagagtgtttgataaaaaggggtatatatgtggatgagatggagttgcac |
41311066 |
T |
|
| Q |
139 |
cagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactcccaagagaaagtagggagagttgccaaatca |
238 |
Q |
| |
|
| ||| |||||||||| | | |||||||||||||||| ||| | ||||| || |||||||||| | |||||||||||||||||||| |||||||| | |
|
|
| T |
41311067 |
ctgttgatatacttaaagtttgtcatcaaagaaacactgaggttgcatccagttgcaccattgttagttccaagagaaagtagggagagatgccaaatta |
41311166 |
T |
|
| Q |
239 |
atgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtattgggttgaagctgagag |
326 |
Q |
| |
|
|| | |||| || ||| |||||| || || || | | ||||||||| |||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
41311167 |
ataggcatgagatcccaattaagacaagagtcgttattattgcttgggctattggaagagatccaaggtattgggttgaagctgagag |
41311254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 13 - 328
Target Start/End: Original strand, 31225615 - 31225930
Alignment:
| Q |
13 |
tcatcaggggttgtgataagggcgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaagg |
112 |
Q |
| |
|
||||||||||||||| || ||| ||| ||||||||| ||||||| |||||| ||||||| ||||||||| ||| ||||||| ||||||| ||||||| |
|
|
| T |
31225615 |
tcatcaggggttgtgttatgggggatatctgagatggtaaagaacccaaagataatggaggaagcacaagctgaagtaagaaacatgtttgataaaaagg |
31225714 |
T |
|
| Q |
113 |
ggtatgtggatgagacagagttgaatcagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactcccaag |
212 |
Q |
| |
|
| |||| ||||| ||||||||| | || ||| |||||||||| | ||| || | ||||||| | || ||||||| ||| ||| ||||| | ||||| |
|
|
| T |
31225715 |
gacatgtcgatgaaacagagttgcaccaattaatatacttaaagtctataattagagaaacattgagattacatccatctgcacctttgttggttccaag |
31225814 |
T |
|
| Q |
213 |
agaaagtagggagagttgccaaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtattgg |
312 |
Q |
| |
|
||||||||| ||||| ||||||||||||| |||||| || |||||||| || || ||| | |||||| |||||| |||||||||||| || ||||||| |
|
|
| T |
31225815 |
agaaagtagagagagatgccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaaggtattgg |
31225914 |
T |
|
| Q |
313 |
gttgaagctgagagtt |
328 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
31225915 |
gcagaagctgagagtt |
31225930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 32 - 176
Target Start/End: Original strand, 41431970 - 41432114
Alignment:
| Q |
32 |
gggcgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgtggatgagacaga |
131 |
Q |
| |
|
||||||||||||||||| ||||| || || || ||||| ||||||||| ||||||||||||||||||||| | || ||||||||||||||||| || |
|
|
| T |
41431970 |
gggcgatgtctgagatggcgaagaacccgaatgtgatggaagaagcacaagctgaggtaagaagagtgtttgatatgaaagggtatgtggatgagactga |
41432069 |
T |
|
| Q |
132 |
gttgaatcagttactatacttaaaatgtatcatcaaagaaacact |
176 |
Q |
| |
|
|||| | | || ||||||| || | |||||||||||||||||| |
|
|
| T |
41432070 |
gttgcactaattgatatacttgaagtctatcatcaaagaaacact |
41432114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 14235879 - 14235962
Alignment:
| Q |
36 |
gatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgt |
119 |
Q |
| |
|
|||||||||||| ||||||| || | ||| ||||| ||||||||| |||||||||||| | |||||| | |||||||||||| |
|
|
| T |
14235879 |
gatgtctgagattgtaaagaaccctagggtgatggaagaagcacaagctgaggtaagaagggagtttgatagaaaggggtatgt |
14235962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 37 - 328
Target Start/End: Complemental strand, 17248956 - 17248665
Alignment:
| Q |
37 |
atgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgtggatgagacagagttga |
136 |
Q |
| |
|
||||||||||| |||| || |||||||| ||||| | ||||||| |||||||||||| || ||||| | |||||||||||| ||||| || |||||| |
|
|
| T |
17248956 |
atgtctgagataataaaaaacccaaaggtgatggaagcagcacaagctgaggtaagaagtgtttttgatagaaaggggtatgtagatgaaacggagttgg |
17248857 |
T |
|
| Q |
137 |
atcagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactcccaagagaaagtagggagagttgccaaat |
236 |
Q |
| |
|
|||| ||| |||||||||| | | |||||||||||||||| ||||| |||||| || ||||||||| | || ||| |||||||||| | || | ||| |
|
|
| T |
17248856 |
atcaattaatatacttaaattctgtcatcaaagaaacactgaggctgcatcctattgtaccattgttgattcctagacaaagtagggaaaaatgtcgaat |
17248757 |
T |
|
| Q |
237 |
caatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtattgggttgaagctgagagtt |
328 |
Q |
| |
|
||| | ||||||||||||||||||||| |||||| ||| |||| |||||| |||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
17248756 |
caacgggtatgatattccagctaagacaagggttgctgttaatgtttgggcaattggaagagatcaaaggtattgggttgaagctgagagtt |
17248665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 312
Target Start/End: Original strand, 15885829 - 15885867
Alignment:
| Q |
274 |
gtcaatgcttgggcgattggaagagattcaaagtattgg |
312 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
15885829 |
gtcaatgcatgggcgattggaagagatccaaagtattgg |
15885867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 23024435 - 23024374
Alignment:
| Q |
244 |
tatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaa |
305 |
Q |
| |
|
||||| |||||| ||||||||| ||| || |||||||||||||| |||| ||||||| |||| |
|
|
| T |
23024435 |
tatgacattccaactaagactaaggtgatagtcaatgcttgggcaattgcaagagatccaaa |
23024374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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