View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2023_low_11 (Length: 322)
Name: NF2023_low_11
Description: NF2023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2023_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 528170 - 527860
Alignment:
| Q |
1 |
ataaaagaaaaactaaagcttagtttgagatcaaacaatatgaaagatgttgttagcgaataattaaggatgatttaatttaatgtacttacacgataaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
528170 |
ataaaagaaaaactaaagcttagtttgagatcaaacaatatgaaagatgttgttagcgaataattaaggatgatttaatttaatgtacttacacggtaaa |
528071 |
T |
|
| Q |
101 |
agttaatcataaatgttggatcattattttaaattttttgcagggcatatctattttgaaaatcgtaataaatgatgaggtacctctttcctaaggagag |
200 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
528070 |
agttaatcataaatgttggatcattatttttaattttttgcagggcatatctattttgaaaatcgtaataaatgatgaggtacctctttcctaaggagag |
527971 |
T |
|
| Q |
201 |
cattctccagtcttagctgctgctcctcatgtgacatttccccagcgttagaggaacttccacatactttgcatgtggtactaattgcccccttgtatct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
527970 |
cattctccagtcttagctgctgctcctcatgtgacatttccccagcgttagaggaacttccacatactttgcatgtggtactaattgcccccttgtatct |
527871 |
T |
|
| Q |
301 |
atcaagttcat |
311 |
Q |
| |
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||||||||||| |
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| T |
527870 |
atcaagttcat |
527860 |
T |
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