View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2023_low_14 (Length: 219)
Name: NF2023_low_14
Description: NF2023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2023_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 14518239 - 14518162
Alignment:
| Q |
17 |
aactaagaccaaaatgggatttttcgaaagaatggaaaagatgagtgtatgtatctttatattcgcacagtagtttcc |
94 |
Q |
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| T |
14518239 |
aactaagaccaaaatgggattcttcgaaagaatggaaaagatgagtgtatgtatctttatattcgcaaagtagtttcc |
14518162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 14535744 - 14535700
Alignment:
| Q |
17 |
aactaagaccaaaatgggatttttcgaaagaatggaaaagatgag |
61 |
Q |
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| T |
14535744 |
aactaagaccaaaatgggattttttgaaagaatggaaaaggtgag |
14535700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 14518096 - 14518037
Alignment:
| Q |
160 |
acatcctacattcctctctagtgaatacaacacgcaagacgatctgtgtctggttcctct |
219 |
Q |
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| T |
14518096 |
acatcatacattcctctccagggaaaacaacgcgcaagacgatctgtgtcgggttcctct |
14518037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 37338183 - 37338228
Alignment:
| Q |
17 |
aactaagaccaaaatgggatttttcgaaagaatggaaaagatgagt |
62 |
Q |
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| T |
37338183 |
aactaaaaccaaaatgggattcttcgaaagaatgcaaaaggtgagt |
37338228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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