View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2023_low_2 (Length: 398)
Name: NF2023_low_2
Description: NF2023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2023_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 37 - 383
Target Start/End: Complemental strand, 48759671 - 48759325
Alignment:
| Q |
37 |
caacaagagcaaaaaataaatcaacaagtgggaacgacgccgtatccagaaatggaatcaactgcatcagtgcgtttcgcaaacctccctttaatcctag |
136 |
Q |
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| T |
48759671 |
caacaagagcaaaaaataaatcaacaagtgggaacgacgccgtatccagaaatggaatcaactgcatcagtgcgtttcgcaaacctccctttaatcctag |
48759572 |
T |
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| Q |
137 |
gcctagtttccgcataagctttacgagaagcataacgaattgtcttctcgaatcttcgattcttcctcttctccctgtacctcataaccctagcttcacg |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48759571 |
gcctagtttccgcataagctttacgagaagcataacgaattgtcttctcgaatcttcgattcttcctcttctccctgtacctcataaccctagcttcacg |
48759472 |
T |
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| Q |
237 |
atccaccgccaccgtcccgtaaccacagtttgatatctccggcacggtgttcgagtcaggaacaactccaacgtccatcgaggaagatgaaatctaatca |
336 |
Q |
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| T |
48759471 |
atccaccgccaccgtcccgtaaccacagtttgatatctccggcacggtgttcgcgtcaggaacaactccaacgtccatcgaggaagatgaaacctaatca |
48759372 |
T |
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| Q |
337 |
atcataacnnnnnnntaagtgtaagatatatattaatcaatatttct |
383 |
Q |
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| T |
48759371 |
atcataacaaaaaaataagtgtaagatatatattaatcaatatttct |
48759325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 109 - 246
Target Start/End: Original strand, 3419911 - 3420048
Alignment:
| Q |
109 |
cgtttcgcaaacctccctttaatcctaggcctagtttccgcataagctttacgagaagcataacgaattgtcttctcgaatcttcgattcttcctcttct |
208 |
Q |
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| T |
3419911 |
cgtttcgcaaaccttcctttaattctaggtctagtttctgcataagcttttctcgaagcgtagcgaatagtcttctcgaatcttctattctttctcttct |
3420010 |
T |
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| Q |
209 |
ccctgtacctcataaccctagcttcacgatccaccgcc |
246 |
Q |
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| T |
3420011 |
ctctgtacctcataaccctagcttctctttccaccgcc |
3420048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 124 - 241
Target Start/End: Complemental strand, 53657525 - 53657408
Alignment:
| Q |
124 |
cctttaatcctaggcctagtttccgcataagctttacgagaagcataacgaattgtcttctcgaatcttcgattcttcctcttctccctgtacctcataa |
223 |
Q |
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|||||||| ||||||| ||||| ||||||||||| || ||||| |||||||| |||||||||||| |||| |||||||| ||||| ||||||||||||| |
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| T |
53657525 |
cctttaattctaggccgggtttctgcataagcttttcgtgaagcgtaacgaatagtcttctcgaattttcggttcttccttttctctctgtacctcataa |
53657426 |
T |
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| Q |
224 |
ccctagcttcacgatcca |
241 |
Q |
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|||| ||||||||||||| |
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| T |
53657425 |
ccctcgcttcacgatcca |
53657408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 29430561 - 29430493
Alignment:
| Q |
173 |
gaattgtcttctcgaatcttcgattcttcctcttctccctgtacctcataaccctagcttcacgatcca |
241 |
Q |
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|||| |||||||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
29430561 |
gaatagtcttctcgaattttcagttcttcctcttctctctgtacctcataaccctcgcttcacgatcca |
29430493 |
T |
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