View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2023_low_3 (Length: 380)
Name: NF2023_low_3
Description: NF2023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2023_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 37770763 - 37770614
Alignment:
| Q |
1 |
tggtatatttaactatttaaaagtaaaagttgttgttttcaataacaatttatattgccaagtttgatgcctcttctgatgtagagttccttcgacatga |
100 |
Q |
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| T |
37770763 |
tggtatatttaactatttaaaagtaaaagttgttgttttcaataacaatttctattgccaagcttggtgcctcttctgatgtagagttccttcgacatga |
37770664 |
T |
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| Q |
101 |
atctcctccgataaacctccaaagtctcctccatagtgatgcagctggaa |
150 |
Q |
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| T |
37770663 |
gtctcccccgataaacctccaaagtctcctccatagtgatgcagttggaa |
37770614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 234 - 364
Target Start/End: Complemental strand, 37770523 - 37770392
Alignment:
| Q |
234 |
taacaatttctattttttacctttttaaccagcgcactatagcatgacctatatttttagctgtcttgcagatattgattgaggagaatctttacgctag |
333 |
Q |
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| T |
37770523 |
taacaatttctattttttacctttttaaccagcgcactatagcatgacctatatttttaattgtcttgcagatattaattgaggacaatctttacactag |
37770424 |
T |
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| Q |
334 |
taatgtaaatcatgtttat-aaatgttagttt |
364 |
Q |
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| T |
37770423 |
taatgtaaatcatgtttataaaatgttagttt |
37770392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 26333848 - 26333784
Alignment:
| Q |
55 |
ttgccaagtttgatgcctcttctgatgtagagttccttcgacatgaatctcctccgataaacctc |
119 |
Q |
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| T |
26333848 |
ttgccaagtttagtgactcttctgatgttgagtttcttcggcatgagtctcctccgttgaacctc |
26333784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 43706527 - 43706445
Alignment:
| Q |
68 |
tgcctcttctgatgtagagttccttcgacatgaatctcctccgataaacctccaaagtctcctccatagtgatgcagctggaa |
150 |
Q |
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| T |
43706527 |
tgcctcttttgatgtcgagtttcttcgacatgagtgttctccggtaaacctccagaatctcctccaaagtgatgcagatggaa |
43706445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 9082939 - 9082874
Alignment:
| Q |
68 |
tgcctcttctgatgtagagttccttcgacatgaatctcctccgataaacctccaaagtctcctcca |
133 |
Q |
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| T |
9082939 |
tgcctcttctgatgttgaatttcttcgacatgagtctcctctaatgaacctcaaaaatctcctcca |
9082874 |
T |
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