View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2023_low_5 (Length: 376)

Name: NF2023_low_5
Description: NF2023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2023_low_5
NF2023_low_5
[»] chr4 (12 HSPs)
chr4 (18-360)||(12120818-12121160)
chr4 (112-360)||(1504569-1504817)
chr4 (112-343)||(1537243-1537474)
chr4 (29-343)||(1488733-1489047)
chr4 (175-253)||(1486802-1486880)
chr4 (195-253)||(5106312-5106370)
chr4 (210-326)||(558919-559035)
chr4 (213-252)||(5035626-5035665)
chr4 (209-274)||(6007647-6007712)
chr4 (201-250)||(12118050-12118099)
chr4 (209-253)||(2486310-2486354)
chr4 (202-250)||(12115382-12115430)
[»] chr7 (1 HSPs)
chr7 (120-176)||(15091284-15091340)
[»] chr5 (4 HSPs)
chr5 (209-253)||(32268773-32268817)
chr5 (216-249)||(12846943-12846976)
chr5 (112-161)||(29022133-29022182)
chr5 (120-160)||(41886296-41886336)
[»] chr2 (2 HSPs)
chr2 (104-143)||(44575081-44575120)
chr2 (120-176)||(45244526-45244582)
[»] chr6 (6 HSPs)
chr6 (119-161)||(6427508-6427550)
chr6 (209-250)||(6395781-6395822)
chr6 (209-246)||(6427432-6427469)
chr6 (209-254)||(7993320-7993365)
chr6 (209-250)||(14821628-14821669)
chr6 (121-161)||(6433172-6433212)
[»] chr8 (1 HSPs)
chr8 (209-253)||(32152209-32152253)
[»] chr3 (1 HSPs)
chr3 (221-253)||(51112983-51113015)


Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 12120818 - 12121160
Alignment:
Q  18 gtattcaatatgaaaacaagaaactctctcaattctgaacaaccacaacaattatcgctttctcaatcaaaatcagctgcagagattgcaacaacagatc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  12120818 gtattcaatatgaaaacaagaaactctctcaattctgaacaaccacaacaattatcgctttctcaatcaaaatcagctgcagcgattgcaacaaaagatc 12120917  T
Q  118 tatatttacctgatgagtgttgggaatgcgtcatcagattcctcgacaacgacaacaaccacagcaacagctccttaaagtctttctctgccgtctcaaa 217  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12120918 tatatttacctgatgagtgttgggaatgtgtcatcagattcctcgacaacgacgacaaccacagcaacagctccttaaagtctttctctgccgtctcaaa 12121017  T
Q  218 gcagttcctctccatcaccaaccgtcttcgattctcaataactatccgtcacccaacccggattcgccccagtggactcttccaaagattccctaacctc 317  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12121018 gcagttcctctccatcaccaaccgtcttcgatactcaataactatccgtcacccaacccggatttgccccagtggactcttccaaagattccctaacctc 12121117  T
Q  318 acctccctccgcctcactcactactatggtggtgacatatttt 360  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  12121118 acctctctccgcctcactcactactatggtggtgacatatttt 12121160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 112 - 360
Target Start/End: Original strand, 1504569 - 1504817
Alignment:
Q  112 cagatctatatttacctgatgagtgttgggaatgcgtcatcagattcctcgacaacgacaacaaccacagcaacagctccttaaagtctttctctgccgt 211  Q
    ||||| |||||||| ||||| ||||||||||||| ||| ||||||||||| |||||| |||||| |||| |||||||||||||| |||||||||||||||    
T  1504569 cagatttatatttatctgatcagtgttgggaatgtgtcgtcagattcctcaacaacggcaacaaacacaacaacagctccttaacgtctttctctgccgt 1504668  T
Q  212 ctcaaagcagttcctctccatcaccaaccgtcttcgattctcaataactatccgtcacccaacccggattcgccccagtggactcttccaaagattccct 311  Q
    |  |||||||||||| || ||||||||||||||||||||||||||||||||| || |||||||| |  || ||| |||| ||||||||||||||||||||    
T  1504669 cataaagcagttcctgtcgatcaccaaccgtcttcgattctcaataactatctgtgacccaacctgcctttgcctcagttgactcttccaaagattccct 1504768  T
Q  312 aacctcacctccctccgcctcactcactactatggtggtgacatatttt 360  Q
    ||||||||||||||||||||  ||||||||| | |||  ||||||||||    
T  1504769 aacctcacctccctccgccttgctcactacttttgtgacgacatatttt 1504817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 112 - 343
Target Start/End: Original strand, 1537243 - 1537474
Alignment:
Q  112 cagatctatatttacctgatgagtgttgggaatgcgtcatcagattcctcgacaacgacaacaaccacagcaacagctccttaaagtctttctctgccgt 211  Q
    ||||| |||||||||||||||||||||||||||| ||  ||||||||||| |||||| | |  | | || ||||||||||||||||||||| | ||||||    
T  1537243 cagatttatatttacctgatgagtgttgggaatgtgtattcagattcctcaacaacggccatgatcgcaacaacagctccttaaagtctttatgtgccgt 1537342  T
Q  212 ctcaaagcagttcctctccatcaccaaccgtcttcgattctcaataactatccgtcacccaacccggattcgccccagtggactcttccaaagattccct 311  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||| || |||||||| |  || ||| |||| ||||||||||||||||||||    
T  1537343 ctcaaagcagttcctctccatcaccaaccgtcttcaattctcaatatctatcagtgacccaaccagcctttgcctcagtcgactcttccaaagattccct 1537442  T
Q  312 aacctcacctccctccgcctcactcactacta 343  Q
    ||||||||||||||| ||||||||||||||||    
T  1537443 aacctcacctccctctgcctcactcactacta 1537474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 29 - 343
Target Start/End: Original strand, 1488733 - 1489047
Alignment:
Q  29 gaaaacaagaaactctctcaattctgaacaaccacaacaattatcgctttctcaatcaaaatcagctgcagagattgcaacaacagatctatatttacct 128  Q
    |||||||||||||| |||||||| | |||||| ||||||| |||| | ||||||| |||||||||||| || ||||| |||| ||||  | |||||||||    
T  1488733 gaaaacaagaaactttctcaattttaaacaacgacaacaactatcacgttctcaaacaaaatcagctgaagtgattggaacaccagaattttatttacct 1488832  T
Q  129 gatgagtgttgggaatgcgtcatcagattcctcgacaacgacaacaaccacagcaacagctccttaaagtctttctctgccgtctcaaagcagttcctct 228  Q
    |||||||| |||||||| ||| ||| ||||||| || ||| | || || ||| ||  || ||||| ||||||||||||||||||||||||||||||||||    
T  1488833 gatgagtgctgggaatgtgtcgtcaaattcctcaacgacggccacgacaacaacagtagatccttgaagtctttctctgccgtctcaaagcagttcctct 1488932  T
Q  229 ccatcaccaaccgtcttcgattctcaataactatccgtcacccaacccggattcgccccagtggactcttccaaagattccctaacctcacctccctccg 328  Q
    |||||||||||| ||||||||| |||||||| |||    | |||||||    | ||| |||| |||| ||||||||||||||||||||||||||| || |    
T  1488933 ccatcaccaaccatcttcgattttcaataaccatcaaagaaccaacccaccgttgcctcagtcgacttttccaaagattccctaacctcacctccatctg 1489032  T
Q  329 cctcactcactacta 343  Q
    |||||||||||||||    
T  1489033 cctcactcactacta 1489047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 1486802 - 1486880
Alignment:
Q  175 accacagcaacagctccttaaagtctttctctgccgtctcaaagcagttcctctccatcaccaaccgtcttcgattctc 253  Q
    |||||| |||||  |||||||||||| |||| |  ||||||||| |||||||||||| |||||||||||| ||||||||    
T  1486802 accacaacaacatgtccttaaagtctctctccgttgtctcaaaggagttcctctccaacaccaaccgtctccgattctc 1486880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 5106312 - 5106370
Alignment:
Q  195 aagtctttctctgccgtctcaaagcagttcctctccatcaccaaccgtcttcgattctc 253  Q
    |||||| |||||||||||||||| |||||  | |||||||||||||||| |||||||||    
T  5106312 aagtctctctctgccgtctcaaaacagtttttgtccatcaccaaccgtcctcgattctc 5106370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 326
Target Start/End: Complemental strand, 559035 - 558919
Alignment:
Q  210 gtctcaaagcagttcctctccatcaccaaccgtcttcgattctcaataactatccgtcacccaacccg-gattcgccccagtggactcttccaaagattc 308  Q
    |||||||| |||||| |||||||||| |||||| || |||||||||| || ||| || | | |||  | |||| ||| ||||  |||||||||||| |||    
T  559035 gtctcaaaacagttcttctccatcacgaaccgttttagattctcaatcaccatcagtgatctaacaagtgatt-gcctcagtcaactcttccaaaggttc 558937  T
Q  309 cctaacctcacctccctc 326  Q
    ||||||||||||||||||    
T  558936 cctaacctcacctccctc 558919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 5035665 - 5035626
Alignment:
Q  213 tcaaagcagttcctctccatcaccaaccgtcttcgattct 252  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  5035665 tcaaaacagtttctctccatcaccaaccgtcttcgattct 5035626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 6007712 - 6007647
Alignment:
Q  209 cgtctcaaagcagttcctctccatcaccaaccgtcttcgattctcaataactatccgtcacccaac 274  Q
    |||||| || ||||||||||||||||||||| |||| ||||||||  | |||||| |||| |||||    
T  6007712 cgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactatctgtcatccaac 6007647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 12118050 - 12118099
Alignment:
Q  201 ttctctgccgtctcaaagcagttcctctccatcaccaaccgtcttcgatt 250  Q
    |||||||| |||||||| ||||||||||| || || ||||||||||||||    
T  12118050 ttctctgctgtctcaaaacagttcctctctatgactaaccgtcttcgatt 12118099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 2486354 - 2486310
Alignment:
Q  209 cgtctcaaagcagttcctctccatcaccaaccgtcttcgattctc 253  Q
    ||||||||| ||||| || ||||||||||||||||| ||||||||    
T  2486354 cgtctcaaaacagtttctgtccatcaccaaccgtctccgattctc 2486310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 12115382 - 12115430
Alignment:
Q  202 tctctgccgtctcaaagcagttcctctccatcaccaaccgtcttcgatt 250  Q
    ||||||| ||||||||  |||||||||| ||||| ||||||||||||||    
T  12115382 tctctgctgtctcaaaatagttcctctctatcactaaccgtcttcgatt 12115430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 15091284 - 15091340
Alignment:
Q  120 tatttacctgatgagtgttgggaatgcgtcatcagattcctcgacaacgacaacaac 176  Q
    |||||||| ||||||||||||||||||||| |||||||| ||  |||||||||||||    
T  15091284 tatttacccgatgagtgttgggaatgcgtcttcagattcatcatcaacgacaacaac 15091340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 32268817 - 32268773
Alignment:
Q  209 cgtctcaaagcagttcctctccatcaccaaccgtcttcgattctc 253  Q
    |||||| || ||||| |||||||||||||||||||||||||||||    
T  32268817 cgtctccaaacagttactctccatcaccaaccgtcttcgattctc 32268773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 12846976 - 12846943
Alignment:
Q  216 aagcagttcctctccatcaccaaccgtcttcgat 249  Q
    ||||||||||||||||||||||||||||| ||||    
T  12846976 aagcagttcctctccatcaccaaccgtctccgat 12846943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 29022182 - 29022133
Alignment:
Q  112 cagatctatatttacctgatgagtgttgggaatgcgtcatcagattcctc 161  Q
    ||||||| ||||||||||| ||||||||||||||| || ||| |||||||    
T  29022182 cagatctttatttacctgacgagtgttgggaatgcatcttcaaattcctc 29022133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 41886296 - 41886336
Alignment:
Q  120 tatttacctgatgagtgttgggaatgcgtcatcagattcct 160  Q
    |||||||||||||||||||||||||| ||| ||| ||||||    
T  41886296 tatttacctgatgagtgttgggaatgtgtcttcaaattcct 41886336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 143
Target Start/End: Original strand, 44575081 - 44575120
Alignment:
Q  104 tgcaacaacagatctatatttacctgatgagtgttgggaa 143  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  44575081 tgcagcaacagatttatatttacctgatgagtgttgggaa 44575120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 45244526 - 45244582
Alignment:
Q  120 tatttacctgatgagtgttgggaatgcgtcatcagattcctcgacaacgacaacaac 176  Q
    |||||||||||||||||||||||||| ||| | | ||||||| || ||| |||||||    
T  45244526 tatttacctgatgagtgttgggaatgtgtcttgaaattcctcaacgacggcaacaac 45244582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 6427550 - 6427508
Alignment:
Q  119 atatttacctgatgagtgttgggaatgcgtcatcagattcctc 161  Q
    ||||||||||||||||||||||||||| ||| || ||||||||    
T  6427550 atatttacctgatgagtgttgggaatgggtcttcggattcctc 6427508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 6395822 - 6395781
Alignment:
Q  209 cgtctcaaagcagttcctctccatcaccaaccgtcttcgatt 250  Q
    |||||| ||||||||||||||||||||||| | |||||||||    
T  6395822 cgtctccaagcagttcctctccatcaccaatcatcttcgatt 6395781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 6427469 - 6427432
Alignment:
Q  209 cgtctcaaagcagttcctctccatcaccaaccgtcttc 246  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  6427469 cgtctccaagcagttcctctccatcaccaatcgtcttc 6427432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 7993320 - 7993365
Alignment:
Q  209 cgtctcaaagcagttcctctccatcaccaaccgtcttcgattctca 254  Q
    |||||| || ||||||||||||||||||| |||||| |||||||||    
T  7993320 cgtctccaaacagttcctctccatcaccagccgtctccgattctca 7993365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 14821669 - 14821628
Alignment:
Q  209 cgtctcaaagcagttcctctccatcaccaaccgtcttcgatt 250  Q
    |||||| |||||||||||||| |||||||| |||||||||||    
T  14821669 cgtctccaagcagttcctctctatcaccaatcgtcttcgatt 14821628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 6433212 - 6433172
Alignment:
Q  121 atttacctgatgagtgttgggaatgcgtcatcagattcctc 161  Q
    ||||||||||||| |||||||||||| || |||||||||||    
T  6433212 atttacctgatgactgttgggaatgcatcttcagattcctc 6433172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 32152253 - 32152209
Alignment:
Q  209 cgtctcaaagcagttcctctccatcaccaaccgtcttcgattctc 253  Q
    |||||| || ||||||||||||||||||||| |||| ||||||||    
T  32152253 cgtctccaaacagttcctctccatcaccaacagtctccgattctc 32152209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 51112983 - 51113015
Alignment:
Q  221 gttcctctccatcaccaaccgtcttcgattctc 253  Q
    |||||||||||||||||||||||| ||||||||    
T  51112983 gttcctctccatcaccaaccgtctccgattctc 51113015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University