View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2023_low_9 (Length: 338)
Name: NF2023_low_9
Description: NF2023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2023_low_9 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 24494906 - 24494598
Alignment:
| Q |
19 |
gaagttcagagagaagtgatgacaaccagagaacttctgcagatgcggatgctagagctctatattcagcttcagtggatgatcttgcaacggctttttg |
118 |
Q |
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| T |
24494906 |
gaagttcagagagaagtgatgacaaccagagaacttctgcagatgcggatgctagagctctatattcagcttcagtggatgatcttgcaacggctttttg |
24494807 |
T |
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| Q |
119 |
tttaaaagacttccaagaaattgggttaccaccataaaatgtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactg |
218 |
Q |
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| T |
24494806 |
tttaaaagacttccaagaaattgggttaccaccataaaatgtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactg |
24494707 |
T |
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| Q |
219 |
aatgcataaagattttgagaagaagtgtgcttcaagtgaagtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggatgtaaagtgtg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
24494706 |
aatgcataaagattttgagaagaagtgtgcttcaagtgaagtccatgaaacatggtggctttgagatatcaaagaagtcttttcaaggctgtaaagtgtg |
24494607 |
T |
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| Q |
319 |
tagatgatg |
327 |
Q |
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||||||||| |
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| T |
24494606 |
tagatgatg |
24494598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 149 - 327
Target Start/End: Complemental strand, 94126 - 93948
Alignment:
| Q |
149 |
accataaaatgtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgc |
248 |
Q |
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| T |
94126 |
accataaaatgtaacatgtgcagaggtggatgtataatcatctcgatttccagcccaatcggcatcactgaatgcatatagattttgagaagaagtgcac |
94027 |
T |
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| Q |
249 |
ttcaagtgaagtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggatgtaaagtgtgtagatgatg |
327 |
Q |
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| T |
94026 |
ttcaagtgaagtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggttgtaaagtgtgtagatgatg |
93948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 86371 - 86237
Alignment:
| Q |
19 |
gaagttcagagagaagtgatgacaaccagagaacttctgcagatgcggatgctagagctctatattcagcttcagtggatgatcttgcaacggctttttg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
86371 |
gaagttcagagagaagtgatgacaaccagagaacttctgcggatgcgtatgctagagctctgtattcagcttcagtggatgatcttgcaacaaatttttg |
86272 |
T |
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| Q |
119 |
tttaaaagacttccaagaaattgggttaccaccat |
153 |
Q |
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| T |
86271 |
tttaaaagacttccaagaaattgggttaccaccat |
86237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 18557086 - 18557131
Alignment:
| Q |
19 |
gaagttcagagagaagtgatgacaaccagagaacttctgcagatgc |
64 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18557086 |
gaagttcagagagaagtgatgacaaccagagaacttctgcggatgc |
18557131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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