View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2024-Insertion-11 (Length: 550)
Name: NF2024-Insertion-11
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024-Insertion-11 |
 | |
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| [»] chr5 (9 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 531; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 8 - 550
Target Start/End: Original strand, 1058847 - 1059389
Alignment:
| Q |
8 |
ctcacagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggaggttacgaccgaaatgatgggatcaatgccatagctgaaaatag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1058847 |
ctcacagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggaggttacgaccgaaatgatgggatcaatgccatagctgaaaatag |
1058946 |
T |
|
| Q |
108 |
gacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctcctctaaacaagtataacagggcgaca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
1058947 |
gacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttaatgctcctctaaacaagtataacagggcgaca |
1059046 |
T |
|
| Q |
208 |
ttctacacttcagatccggttataggttatactgactacccttttcttgaatgaagaaaccagtgttgtagcatcaaagtgtggaatctcttcactaaat |
307 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1059047 |
ttctacacttcagatccagttataggttatactgactacccttttcttgaatgaagaaaccagtgttgtagcatcaaagtgtggaatctcttcactaaat |
1059146 |
T |
|
| Q |
308 |
aagttcaatacccctttgctaattgctttctgctattgattcctctcatgcttagtctgataatgctttggagtttggagccagctcacacattttgtaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1059147 |
aagttcaatacccctttgctaattgctttctgctattgattcctctcatgcttagtctgataatgctttggagtttggagccagctcacacattttgtaa |
1059246 |
T |
|
| Q |
408 |
atggtcaggaaaacatagtatgtaagagtaaaactacttttgtatgtgataaagtcactgtatgccaaaaagaagtttacctgattttacaaaattacaa |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1059247 |
atggtcaggaaaacatagtatgtaagagtaaaactacttttgtatgtgataaagtcactgtatgccaaaaagaagtttacctgattttacaaaattacaa |
1059346 |
T |
|
| Q |
508 |
tacgcgttttgtgctaacaagaggattatttccgttgtctcgt |
550 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1059347 |
tacgcgttttgtgctaacaagaggattatttccattgtctcgt |
1059389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 344
Target Start/End: Original strand, 1071669 - 1072001
Alignment:
| Q |
11 |
acagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggaggttacgaccgaaatgatgggatcaatgccatagctgaaaataggac |
110 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| | |
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| T |
1071669 |
acagccttgtgccaatgagaaaggccttcaaaggcactttcatggttgcaggaggttacgaccgacatgatgggatcaatgccatagctgaaaacagggc |
1071768 |
T |
|
| Q |
111 |
agaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctcctctaaacaagtataacagggcgacattc |
210 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1071769 |
agacctagttgtatatggtcgtttgttcttagctaatccagatttgccaaagagatttgcacttgatgctcctctaaacaagtataacagggagacattt |
1071868 |
T |
|
| Q |
211 |
tacacttcagatccggttataggttatactgactacccttttcttgaatgaagaaaccagtgttgtagcatcaaagtgtggaatctcttcactaaataag |
310 |
Q |
| |
|
||| ||| ||||| ||| |||||||||||||||||||||||||||||||||| |||| ||| ||||||||| |||||||||||||| |||||||||||| |
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| T |
1071869 |
tacgtttctgatccagttctaggttatactgactacccttttcttgaatgaaggaaccggtgctgtagcatccaagtgtggaatctcctcactaaataag |
1071968 |
T |
|
| Q |
311 |
ttcaatacccctttgctaattgctttctgctatt |
344 |
Q |
| |
|
||| || ||| |||| ||||||||| ||||||| |
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|
| T |
1071969 |
gtcattatccc-ttgcaaattgctttatgctatt |
1072001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 346
Target Start/End: Original strand, 1065942 - 1066276
Alignment:
| Q |
11 |
acagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggaggttacgaccgaaatgatgggatcaatgccatagctgaaaataggac |
110 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| | |
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|
| T |
1065942 |
acagccttgtgccaatgagaaaggccttcaaaggcactttcatggttgcaggaggttacgaccgacatgatgggatcaatgccatagctgaaaacagggc |
1066041 |
T |
|
| Q |
111 |
agaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctcctctaaacaagtataacagggcgacattc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| |||||||||| ||| ||| |
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| T |
1066042 |
agaccttgttgtatatggtcgtttgttcttagctaatccagatttaccaaagagatttgcacttgatgctcctctgaacaaatataacagggagacgttc |
1066141 |
T |
|
| Q |
211 |
tacacttcagatccggttataggttatactgactacccttttcttgaatgaagaaaccagtgttgtagcatcaaagtgtggaatctcttcactaaataag |
310 |
Q |
| |
|
|||| ||| ||||| ||| ||||||||||||||||||| |||||||||||||||||| || ||||||||| |||||||||||||| |||||||||||| |
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|
| T |
1066142 |
tacatttctgatccagttctaggttatactgactacccctttcttgaatgaagaaactgatgctgtagcatccaagtgtggaatctcctcactaaataag |
1066241 |
T |
|
| Q |
311 |
ttcaatacccctttgctaattgctttctgctattga |
346 |
Q |
| |
|
|||| || ||| |||| ||||| ||||||||||||| |
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|
| T |
1066242 |
ttcattatccc-ttgcaaattgatttctgctattga |
1066276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 1033948 - 1034206
Alignment:
| Q |
19 |
gtgccgatgagaaaggccttcaaaggcactttcctggctgcaggaggttacgaccgaaatgatgggatcaatgccatagctgaaaataggacagaccttg |
118 |
Q |
| |
|
||||| ||||||||||| ||||| || |||||| ||| ||| |||||||| ||| || | |||||||||||||| ||||| || |||||| |||| |||| |
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|
| T |
1033948 |
gtgcccatgagaaaggctttcaatggtactttcatggttgcgggaggttatgacagacaagatgggatcaatgctatagcagataatagggcagatcttg |
1034047 |
T |
|
| Q |
119 |
ttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctcctctaaacaagtataacagggcgacattctacacttc |
218 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| || || |||||||||| ||||||||||||||| |
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|
| T |
1034048 |
ttgtttatggtcgtttgttcttagcgaatccagatttgccgaagagatttgcactaaacgctcctctcaataaatataacagggagacattctacacttc |
1034147 |
T |
|
| Q |
219 |
agatccggttataggttatactgactacccttttcttgaatgaagaaaccagtgttgta |
277 |
Q |
| |
|
||||||||| |||||||||| ||||| || ||||||||||||||||| || ||||||| |
|
|
| T |
1034148 |
tgatccggttgtaggttatacggactatccctttcttgaatgaagaaaacaatgttgta |
1034206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 1044335 - 1044593
Alignment:
| Q |
19 |
gtgccgatgagaaaggccttcaaaggcactttcctggctgcaggaggttacgaccgaaatgatgggatcaatgccatagctgaaaataggacagaccttg |
118 |
Q |
| |
|
||||| ||||||||||| ||||| ||| ||||| ||||||||||||| || ||| || | || |||||| |||| ||||||||||| | | |||| |||| |
|
|
| T |
1044335 |
gtgccaatgagaaaggctttcaatggctctttcatggctgcaggaggctatgacagacaagacgggatcgatgctatagctgaaaacaaggcagatcttg |
1044434 |
T |
|
| Q |
119 |
ttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctcctctaaacaagtataacagggcgacattctacacttc |
218 |
Q |
| |
|
| || |||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||| ||||||||||| |||| ||||||||||| ||| |
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|
| T |
1044435 |
tagtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcacttaatgctcctctcaacaagtataatagggagacattctacatttc |
1044534 |
T |
|
| Q |
219 |
agatccggttataggttatactgactacccttttcttgaatgaagaaaccagtgttgta |
277 |
Q |
| |
|
||||||||| | ||||| |||||||| || ||||||||||||||||| || ||||||| |
|
|
| T |
1044535 |
tgatccggttgttggttacactgactatccctttcttgaatgaagaaaacaatgttgta |
1044593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 79 - 259
Target Start/End: Original strand, 1053653 - 1053833
Alignment:
| Q |
79 |
gatgggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatg |
178 |
Q |
| |
|
||||| |||||||| ||||||||||||||| |||| ||| ||| ||||||||||||||| || ||||||||||||| || ||||||||||||||| ||| |
|
|
| T |
1053653 |
gatggaatcaatgctatagctgaaaatagggcagatcttattgcttatggtcgtttgttcatatctaatccagatttaccaaagagatttgcacttaatg |
1053752 |
T |
|
| Q |
179 |
ctcctctaaacaagtataacagggcgacattctacacttcagatccggttataggttatactgactacccttttcttgaat |
259 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
1053753 |
ctcctcttaacaagtataatagggagacattctacacttctgatccagttataggttatactgactacccttctcttgaat |
1053833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 82 - 267
Target Start/End: Original strand, 1046984 - 1047169
Alignment:
| Q |
82 |
gggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctc |
181 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| ||||||| || | ||||| ||| ||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
1046984 |
gggatcaatgctatagctgaaaatagggtagatcttgttgcttacgaccgtttattcatagctaatccagatttgccaaagagatttgcacttaatgctc |
1047083 |
T |
|
| Q |
182 |
ctctaaacaagtataacagggcgacattctacacttcagatccggttataggttatactgactacccttttcttgaatgaagaaac |
267 |
Q |
| |
|
| |||||||||||||| | || |||||||| |||||| ||||| ||| | |||||||| |||||||||||||||||||||| |||| |
|
|
| T |
1047084 |
ccctaaacaagtataatatggagacattctgcacttctgatccagttcttggttataccgactacccttttcttgaatgaataaac |
1047169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 79 - 256
Target Start/End: Complemental strand, 1640548 - 1640371
Alignment:
| Q |
79 |
gatgggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatg |
178 |
Q |
| |
|
|||||||| ||||||||| |||||||| |||||| ||||||| |||||||| ||||| || ||||||||||||| || |||||||| || || |||| |
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|
| T |
1640548 |
gatgggattgatgccatagttgaaaataagacagatcttgttgcttatggtcgcttgtttatatctaatccagatttaccaaagagattcgcgctcgatg |
1640449 |
T |
|
| Q |
179 |
ctcctctaaacaagtataacagggcgacattctacacttcagatccggttataggttatactgactacccttttcttg |
256 |
Q |
| |
|
||||||| |||||||||||| ||| ||||||||||| || ||||||||| | |||||||| |||||||||||||||| |
|
|
| T |
1640448 |
ctcctctcaacaagtataaccgggaaacattctacacatctgatccggttctcggttatacagactacccttttcttg |
1640371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 381 - 483
Target Start/End: Original strand, 1072076 - 1072179
Alignment:
| Q |
381 |
tttggagccagctcacacattttgtaaatggtcaggaaaacatagtatgtaagagtaaaactacttttg--tatgtgataaagtcactgtatgccaaaaa |
478 |
Q |
| |
|
|||||| |||| ||||||||||||||||| |||||| || ||||||||||||||||||||||||| ||| |||||||| ||||||||| ||||||| || |
|
|
| T |
1072076 |
tttggacccagttcacacattttgtaaattgtcagggaa-catagtatgtaagagtaaaactactgttgtatatgtgattaagtcactgaatgccaacaa |
1072174 |
T |
|
| Q |
479 |
gaagt |
483 |
Q |
| |
|
||||| |
|
|
| T |
1072175 |
gaagt |
1072179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 88 - 171
Target Start/End: Original strand, 65854 - 65937
Alignment:
| Q |
88 |
aatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgca |
171 |
Q |
| |
|
||||| ||||| ||||||| | |||| |||||||| |||||||||| |||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
65854 |
aatgctatagcagaaaataaggcagatcttgttgtttatggtcgttcgttcttagctaatccaaatttgccaaagagatttgca |
65937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 12121399 - 12121338
Alignment:
| Q |
110 |
cagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgca |
171 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
12121399 |
cagatcttgttgtttatggtcgtttgttcttagctaatccagatttgccaatgagatttgca |
12121338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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