View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2024-Insertion-12 (Length: 514)
Name: NF2024-Insertion-12
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024-Insertion-12 |
 | |
|
| [»] chr5 (5 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 8 - 514
Target Start/End: Original strand, 39117239 - 39117742
Alignment:
| Q |
8 |
gtcgagaggtaggtgcggttggcggaagggaggtaacgagagtagtggtgagatggaggttagggtgcaagatgttcaagtgtcaagttctgttagagtt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39117239 |
gtcgagaggtaggtgcggttggcggaagggaggtaacgagagtagtggtgagatggaggttagggtgcaagatgttcaagtgtcaagttctgttagagtt |
39117338 |
T |
|
| Q |
108 |
aaaaggtttaaattttttaagtttctgatggataataactgttatgttggannnnnnnnnaattgaattttctttcttgtagaacaagaaacaatatttg |
207 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39117339 |
aaaagatttaaattttttaagtttctgatggataataactgttatgttggatttttttt-aattgaattttctttcttgtagaacaagaaacaatatttg |
39117437 |
T |
|
| Q |
208 |
accaaacaatgatagtaaaaagaaaagtaattaagaatgkgacaattgagtctttattaaagaaagactttgaagctgagatgaaatgaccgagggggtg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39117438 |
accaaacaatgatagtaaaaagaaaagtaattaagaatgtgacaattgagtctttattaaagaaagactttgaagctgagatgaaatgaccgagggggtg |
39117537 |
T |
|
| Q |
308 |
ggctcccttcttttcaaaataacacagtgatattagtggtggtcagtcgactctcaaaggcttcacactttggtatgctgccgaccaatttcactgctgt |
407 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39117538 |
ggctcccttcttttcaaaataaca--gtgatattagtggtggtcggtcgactctcaaaggcttcacactttggtatgctgccgaccaatttcactgctgt |
39117635 |
T |
|
| Q |
408 |
caaagtggcaaagttgtttgctcaaatatatgcaagctacatagaatggcgaagactcttgtacatctggccgtgacccgattttctcagttatttttgg |
507 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39117636 |
caaagttgcaaagttgtttgctcaaatatatgcaagctacatagaatggcgaagactcttgtacatctggccgtgacccgattttctcagttgtttttgg |
39117735 |
T |
|
| Q |
508 |
cgtgaac |
514 |
Q |
| |
|
||||||| |
|
|
| T |
39117736 |
cgtgaac |
39117742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 68 - 514
Target Start/End: Complemental strand, 38613013 - 38612574
Alignment:
| Q |
68 |
tagggtgcaagatgttcaagtgtcaagttctgttagagttaaaa-ggtttaaattttttaagtttctgatggataataactgttatgttggannnnnnnn |
166 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| ||||||| |
|
|
| T |
38613013 |
taggatgcaagatgttgaagtgtcaagttctgttagagttaaaaaggtttaaattttttaagtttttgatggataataacggttttgttggattttt--- |
38612917 |
T |
|
| Q |
167 |
naattgaattttctttcttgtagaacaagaaacaatatttgaccaaacaatgatagtaaaaagaaaagtaattaagaatgkgacaattgagtctttatta |
266 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||| |||| |
|
|
| T |
38612916 |
-aattgaattgtctttcttgtcgaacaagaaacattatttgaccaaacgatgatagtaaaaa--aaagtaattaagaatgtgacaattgagtcttcatta |
38612820 |
T |
|
| Q |
267 |
aagaaagactttgaagctgagatgaaatgaccgagggggtgggctcccttcttttcaaaataacacagtgatattagtggtggtcagtcgactctcaaag |
366 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
38612819 |
cataaagactttgaagctgagatgaaatgatcgagggggtgggctcccttcttttcaaaatcacactgtgatattagtggtggtcggtcgactctcaaag |
38612720 |
T |
|
| Q |
367 |
gcttcacactttggtatgctgccgaccaatttcactgctgtcaaagtggcaaagttgtttgctcaaat-atatgcaagctacatagaatggcgaagactc |
465 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| || ||||||||| ||| ||||||| | |||||| ||||||||||| |||| |||||| ||||||| |
|
|
| T |
38612719 |
gcttcacactttggtatactgccgatcaatttcaatgttgtcaaagttgcagagttgttcgttcaaatgatatgcaagctgcataaaatggc-aagactc |
38612621 |
T |
|
| Q |
466 |
ttgtacatctggccgtgacccgattttctcagttatttttggcgtgaac |
514 |
Q |
| |
|
||| |||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38612620 |
atgt--atcttaccgtgacccgattttctcagtcgtttttggcgtgaac |
38612574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 70 - 413
Target Start/End: Original strand, 39119557 - 39119898
Alignment:
| Q |
70 |
gggtgcaagatgttcaagtgtcaagttctgttagagttaaaaggtttaaattttttaagtttctgatggataataactgttatgttggannnnnnnnn-a |
168 |
Q |
| |
|
|||||||||||||| | | ||||||||||||||||||| ||||||||||| |||| ||||||| ||| ||| ||||||||||||| | |
|
|
| T |
39119557 |
gggtgcaagatgttgaggagtcaagttctgttagagtttaaaggtttaaaaaatttacgtttctggtggttaa---ctgttatgttggatttttaattga |
39119653 |
T |
|
| Q |
169 |
attgaattt--tctttcttgtagaacaagaaacaatatttgaccaaacaatgatagtaaaaagaaaagtaattaagaatgkgacaattgagtctttatta |
266 |
Q |
| |
|
|||| ||| ||||||||| | || |||||||| |||| |||||||| ||||||||||||| ||||||||||||||||| ||| |||||| ||| ||| |
|
|
| T |
39119654 |
attgtctttcctctttcttgaataataagaaacattatt-gaccaaacgatgatagtaaaaa-aaaagtaattaagaatgtgaccattgagccttcttta |
39119751 |
T |
|
| Q |
267 |
aagaaagactttgaagctgagatgaaatgaccgagggggtgggctcccttcttttcaaaataacacagtgatattagtggtggtcagtcgactctcaaag |
366 |
Q |
| |
|
|||||||| |||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39119752 |
cagaaagaccttgaagctgagatgaaatgattggggtggtgggctcccttcttttcaaaataacacagtgatattagtggtggtcggtcgactctcaaag |
39119851 |
T |
|
| Q |
367 |
gcttcacactttggtatgctgccgaccaatttcactgctgtcaaagt |
413 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39119852 |
gcttcacaatttggtatgctgccgaccaatttcactgctgtcaaagt |
39119898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 435 - 510
Target Start/End: Complemental strand, 38611694 - 38611620
Alignment:
| Q |
435 |
atatgcaagctacatagaatggcgaagactcttgtacatctggccgtgacccga-ttttctcagttatttttggcgt |
510 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||| |||||||||| |||||||||| |
|
|
| T |
38611694 |
atatgcaagctacatggaacggcgaagactcttgt--atctgaccgtgacccgatttttctcagtcgtttttggcgt |
38611620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 38613070 - 38613030
Alignment:
| Q |
30 |
cggaagggaggtaacgagagtagtggtgagatggaggttag |
70 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38613070 |
cggaagggaggtaacgagagtagtggcgagatggaggttag |
38613030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 48237480 - 48237435
Alignment:
| Q |
168 |
aattgaattttctttcttgtagaacaagaaacaatatttgaccaaa |
213 |
Q |
| |
|
||||||| | ||||||||||||||||||||||| | |||||||||| |
|
|
| T |
48237480 |
aattgaactgtctttcttgtagaacaagaaacattctttgaccaaa |
48237435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University