View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2024-Insertion-15 (Length: 326)
Name: NF2024-Insertion-15
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024-Insertion-15 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 320
Target Start/End: Complemental strand, 43208374 - 43208062
Alignment:
| Q |
8 |
gtttcatataaagaaccaagaaattcaaggtacaagacaatagtccacatttacgacttctggaactttaatgtaaggctcctcatagcttggaatagaa |
107 |
Q |
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| T |
43208374 |
gtttcatataaagaaccaagaaattcaaggtacaagacaatagtccacatttacgacttctggaactttaatgtaaggctcctcatagcttggaatagaa |
43208275 |
T |
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| Q |
108 |
gcgagaatggcatccttgtcaaggatataccaatctatcaggcaccattcgtcggtgattcaatatacctgattaacaaataatgaataaacaactcacc |
207 |
Q |
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| T |
43208274 |
gcgaggatagcatccttgtcaaggatataccaatctatcaggcaccattcatcggttattcaatatacctgattaacaaataatgaataaacaactcacc |
43208175 |
T |
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| Q |
208 |
gttgatcaaatgttttaggagtattgtcgcgccaattgttttcgtatctgcagataacatggaaaaaattggaaactaaaaacataaagcaaagccaaac |
307 |
Q |
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| T |
43208174 |
gttgatcaaatgttttaggagtattgtcgcgcaaattgttttcgtatctgcagataacatggaaaaaattggaaactaaaaacataaagcaaagccaaac |
43208075 |
T |
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| Q |
308 |
caagaagcaacaa |
320 |
Q |
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| T |
43208074 |
caagaagcaacaa |
43208062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 48 - 305
Target Start/End: Complemental strand, 43187538 - 43187280
Alignment:
| Q |
48 |
tagtccacatttacgacttctggaactttaatgtaaggctcctcatagcttggaatagaagcgagaatggcatccttgtcaaggatataccaatctatca |
147 |
Q |
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| T |
43187538 |
tagtccacatttaggacttttggaactttaatgtagggctcctcataggttggaatggaagcgaggatggcatccctgtcaaggatatagcaatctatca |
43187439 |
T |
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| Q |
148 |
ggcaccattcgtcggtgattcaatatacctgattaacaaataatgaataaacaactcaccgttgatcaaatgttttaggagtattgtcgcgccaattgtt |
247 |
Q |
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| T |
43187438 |
ggcaccgtcagtcggctatgcaatatgcccaatttacaaataatgaataaacaactcaccgttgatcaaatgtttcaggagtattgtcacgcaaattgtt |
43187339 |
T |
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| Q |
248 |
ttc-gtatctgcagataacatggaaaaaattggaaactaaaaacataaagcaaagccaa |
305 |
Q |
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| T |
43187338 |
ttcagtatctgcagataacattaaaaaaattagaaactaaacacataaagccaagccaa |
43187280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 267
Target Start/End: Complemental strand, 43189528 - 43189331
Alignment:
| Q |
68 |
tggaactttaatgtaaggctcctcatagcttggaatagaagcgagaatggcatccttgtcaaggatataccaatctatcaggcaccattcgtcggtgatt |
167 |
Q |
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| T |
43189528 |
tggaactgtgatgtaaggctattcatagcttggaacggaagcgatgatggcatccctgtcaaggatataccactctattaggcaccattagttggttatc |
43189429 |
T |
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| Q |
168 |
caatatacctgattaacaaataatgaataaacaactcaccgttgatcaaatgttttaggagtattgtcgcgccaattgttttc-gtatctgcagataaca |
266 |
Q |
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| T |
43189428 |
caaaatgcccaatttaca---aatgaataaacagctcaccttgggtcaaatgtttcaggagtattttaaagcaaattgttttcagtatctgcagttaaca |
43189332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 43187626 - 43187582
Alignment:
| Q |
8 |
gtttcatataaagaaccaagaaattcaaggtacaagacaatagtc |
52 |
Q |
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| T |
43187626 |
gtttcatataaaaaaccaagaaattcaaggtacaaggcaatagtc |
43187582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 183 - 305
Target Start/End: Complemental strand, 39852160 - 39852038
Alignment:
| Q |
183 |
acaaataatgaataaacaactcaccgttgatcaaatgttttaggagtattgtcgcgccaattgttttc-gtatctgcagataacatg-gaaaaaattgga |
280 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| ||| ||||||||| |||||||| || |
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| T |
39852160 |
acaaataatgaataaacaactcaccgttgatcaaatgttttaggagtattgtcacgcaaattgttttcagtatatgctgataacatgaaaaaaaattaga |
39852061 |
T |
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| Q |
281 |
aactaaaaacataaagcaaagccaa |
305 |
Q |
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| T |
39852060 |
aact--aaacataaagccaagccaa |
39852038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 39852272 - 39852177
Alignment:
| Q |
48 |
tagtccacatttacgacttctggaacttta-atgtaaggctcctcatagcttggaatagaagcgagaatggcatccttgtcaaggatataccaatc |
142 |
Q |
| |
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||||||||| ||| ||| | |||||||||| |||||||||| ||||||||||||| |||||| | ||||||||| |||||| ||||||| |||| |
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| T |
39852272 |
tagtccacacttaggacatttggaactttatatgtaaggcttctcatagcttggagcagaagcaatgatggcatccctgtcaaagatatacgaatc |
39852177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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