View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2024-Insertion-16 (Length: 374)
Name: NF2024-Insertion-16
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024-Insertion-16 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 10 - 374
Target Start/End: Complemental strand, 12191820 - 12191457
Alignment:
| Q |
10 |
tttttcgagtaggcatatagaatgtcgtggaaacttttgtggagttgaaagtgatgtattatgctagaggcagtaaattgtatgcaagttggagaaagat |
109 |
Q |
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| T |
12191820 |
tttttcgagtaggcatatagaatgtcgtggaaacttt-gtggagttgaaagtgatgtattatgctagaggcagtaaattgtatgcaagttggagaaagat |
12191722 |
T |
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| Q |
110 |
taagaaagaatgcaaattggagattaaagacatttgttactttgagttgattgatgaggaaaaatttgtgtgtaaagtttcatttgaagaaagaagattt |
209 |
Q |
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| T |
12191721 |
taagaaagaatgcaaattggagattaaagacatttgttactttgagttgattgatgaggaaaaatttgtgtttaaagtttcatttgaagaaagaagattt |
12191622 |
T |
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| Q |
210 |
catgagctgtttgagatgctattttagt----tatacttttattcaggcaatgttatttccatgcnnnnnnnnnnnnattgtaagcaactatatttcata |
305 |
Q |
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| T |
12191621 |
catgagctgtttgagatgctattttagttatatatacttttattcaggcaatgttatttccatgc----tttttttaattgtaagcaactatatttcata |
12191526 |
T |
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| Q |
306 |
tgaattatcagcagcatcatattaatctttggactagagtaatatttcgttgatgatccagttattggt |
374 |
Q |
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| T |
12191525 |
tgaattatcagcagcatcatattaatctttggactagtgtaatatttcgttgatgatccagttattggt |
12191457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 77 - 195
Target Start/End: Complemental strand, 12902983 - 12902865
Alignment:
| Q |
77 |
aggcagtaaattgtatgcaagttggagaaagattaagaaagaatgcaaattggagattaaagacatttgttactttgagttgattgatgaggaaaaattt |
176 |
Q |
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| T |
12902983 |
aggcagtagatttcatgcaggttggagaaagtttcaggaagaatgcaaattgaagaagggagacatttgtttgtttgagttaattgatgagaaaaaatgt |
12902884 |
T |
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| Q |
177 |
gtgtgtaaagtttcatttg |
195 |
Q |
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| T |
12902883 |
gtgtttaaagtttcatttg |
12902865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 12879778 - 12879830
Alignment:
| Q |
120 |
tgcaaattggagattaaagacatttgttactttgagttgattgatgaggaaaa |
172 |
Q |
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| T |
12879778 |
tgcaaattggagattggagacacttgatgcttttagttgattgatgaggaaaa |
12879830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 7338677 - 7338613
Alignment:
| Q |
109 |
ttaagaaagaatgcaaattggagattaaagacatttgttactttgagttgattgatgaggaaaaa |
173 |
Q |
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| T |
7338677 |
ttaagaaagattgcaaattggagattggagacacttattactttgagttgattgatgagaaaaaa |
7338613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 24212575 - 24212632
Alignment:
| Q |
109 |
ttaagaaagaatgcaaattggagattaaagacatttgttactttgagttgattgatga |
166 |
Q |
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| T |
24212575 |
ttaagaaagattgcaatttggagattgaagacacttattgctttgagttgattgatga |
24212632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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