View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2024-Insertion-2 (Length: 1070)

Name: NF2024-Insertion-2
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2024-Insertion-2
NF2024-Insertion-2
[»] chr8 (5 HSPs)
chr8 (8-539)||(2578215-2578746)
chr8 (536-983)||(2577739-2578193)
chr8 (17-235)||(2558198-2558412)
chr8 (584-651)||(35578236-35578304)
chr8 (598-651)||(2402687-2402740)
[»] chr6 (6 HSPs)
chr6 (765-907)||(11380361-11380501)
chr6 (598-736)||(5964184-5964324)
chr6 (590-646)||(7747064-7747121)
chr6 (613-685)||(1872472-1872545)
chr6 (600-649)||(4433001-4433050)
chr6 (611-644)||(7379739-7379772)
[»] chr5 (3 HSPs)
chr5 (602-750)||(39646439-39646590)
chr5 (627-686)||(1978536-1978595)
chr5 (598-648)||(32117858-32117909)
[»] chr3 (3 HSPs)
chr3 (600-733)||(51395672-51395804)
chr3 (598-655)||(26576439-26576494)
chr3 (582-634)||(7896322-7896375)
[»] chr1 (2 HSPs)
chr1 (562-638)||(36826680-36826757)
chr1 (598-646)||(28029347-28029395)
[»] chr7 (1 HSPs)
chr7 (606-647)||(20553804-20553845)
[»] chr4 (5 HSPs)
chr4 (614-651)||(3469316-3469353)
chr4 (598-651)||(19420376-19420429)
chr4 (589-660)||(7048709-7048781)
chr4 (584-634)||(9844237-9844288)
chr4 (598-644)||(24188204-24188250)


Alignment Details
Target: chr8 (Bit Score: 508; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 8 - 539
Target Start/End: Complemental strand, 2578746 - 2578215
Alignment:
Q  8 ccagtgttgtacttccgttcataccatagtggtatgttcactcttctatctgtggaatttgtttatgataaatagcccaatgaatatgtaaatataataa 107  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2578746 ccagtgttgtacttccgttcataccatagtggtatgttcacttttctatctgtggaatttgtttatgataaatagctcaatgaatatgtaaatataataa 2578647  T
Q  108 aaacaatcaagttctataacaaagatttcattatgattctttgattggaacctagattgttcgaagtgatcctctgatcctattacaccatttatgctat 207  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2578646 aaacaatcaagttctataacaaagatttcattatggttctttgattggaacctagattgttcgaagtgatcctctgatcctattacaccatttatgctat 2578547  T
Q  208 tgaatctagatactagaagtgctttatttctttaatatcaatgatttaaagacttagatttaaatattctgttcatatctaatgactatatggtaaatta 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2578546 tgaatctagatactagaagtgctttatttctttaatatcaatgatttaaagacttagatttaaatattctgttcatatctaatgactatatgctaaatta 2578447  T
Q  308 gtttcttgcttgaatcacataaatgatgatcaatatgtttgatactgatactgtttgattatgcagatggacaacctttgccaatcagtgaaattgaaaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2578446 gtttcttgcttgaatcacataaatgatgatcaatatgtttgatactgatactgtttgattatgtagatggacaacctttgccaatcagtgaaattgaaaa 2578347  T
Q  408 ggaccttcctggacattctgcagagttgctattagaatccaaatggacatttataactcaagatgtaagtaacctgtttcaatatttttccttttcttta 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2578346 ggaccttcctggacattctgcagagttgctattagaatccaaatggacatttataactcaagatgtaagtaacctgtttcaatatttttccttttcttta 2578247  T
Q  508 aatgcctatgttttaactattatttgtttact 539  Q
    ||||||||||||||||||||| ||||||||||    
T  2578246 aatgcctatgttttaactattttttgtttact 2578215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 536 - 983
Target Start/End: Complemental strand, 2578193 - 2577739
Alignment:
Q  536 tactaatagttttgttactgttggatatggttatcaaatttagattcaaattgtgaatcgaacttattatgaatagtaagatacattaccaataaaaata 635  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2578193 tactaatagttttgttactgttggatatggttatcaaatatagattcaaattgtgaatcgaacttattatgaatagtaagatacattaccaataaaaata 2578094  T
Q  636 tgacattttaaagtaagaaaagcgatatagcaaacctataagctaatatatcagatactagtctcaa--taatcgaggattaaagtcataaatcaaatga 733  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||  |||| || |||||||||||||||||||||||    
T  2578093 tgacattttaaagtaagaaaagcgatatagcaaacctataagctaatatatcatctactagtctcaaaataattgaagattaaagtcataaatcaaatga 2577994  T
Q  734 taacag-aagtgactggccatagagttgacaaaaagaatggctggtagaatgaatcatggttcatcataagagattataattagaaaagagctgccatac 832  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2577993 taacaggaagtgactggccatagagttgacaaaaagaatggctggtagaatgaatcatgattcatcataagagattataattagaaaagagctgccatac 2577894  T
Q  833 agagttcaatataagaataaatacacattgaggattggtatgattatctcgatcgcgttcactttcatatcgaagcgc-acatacgtaactcacata-tt 930  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| ||    
T  2577893 agagttcaatataagaataaatacacattgaggattggtatgattatctcgattgcgttcactttcatatcgaagcgcaacatatgtaactcacatattt 2577794  T
Q  931 tgttagatactga-gattatgaaatat-atgaacaagtacatagaaatttagcca 983  Q
    ||| |||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  2577793 tgtaagatactgataattatgaaatataatgaacaagtacatagaaatttagcca 2577739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 8e-61
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 2558412 - 2558198
Alignment:
Q  17 tacttccgttcataccata--gtggtatgttcactcttctatctgtggaatttgtttatgataaatagcccaatgaatatgtaaatataataaaaacaat 114  Q
    |||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||  |||| |||||||||||        ||| |    
T  2558412 tacttccgttcataccatatagtggtatgttcacttttctatctgtggaatttgtttatgataaatagcttaatggatatgtaaata--------acagt 2558321  T
Q  115 caagttctataacaaagatttcattatgattctttgattggaacctagattgttcgaagtgatcctctgat--cctattacaccatttatgctattgaat 212  Q
    |||||| |||||| |||||||||||||| || |||| ||||||||||||||||| ||||||||||||||||  |||||||||||| ||||||||||||||    
T  2558320 caagttttataaccaagatttcattatggttgtttggttggaacctagattgtttgaagtgatcctctgatcccctattacaccaattatgctattgaat 2558221  T
Q  213 ctagatactagaagtgctttatt 235  Q
     ||||||||||||||||||||||    
T  2558220 gtagatactagaagtgctttatt 2558198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 584 - 651
Target Start/End: Original strand, 35578236 - 35578304
Alignment:
Q  584 aattgtgaatcgaa-cttattatgaatagtaagatacattaccaataaaaatatgacattttaaagtaa 651  Q
    |||||||||||||| |||||||| ||| ||||||||||||||||| |||| ||  ||||||||||||||    
T  35578236 aattgtgaatcgaatcttattataaatcgtaagatacattaccaagaaaactaaaacattttaaagtaa 35578304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 598 - 651
Target Start/End: Complemental strand, 2402740 - 2402687
Alignment:
Q  598 cttattatgaatagtaagatacattaccaataaaaatatgacattttaaagtaa 651  Q
    |||| ||||||| |||||||||||||| ||||| ||||||||||||| ||||||    
T  2402740 cttactatgaatcgtaagatacattactaataagaatatgacatttttaagtaa 2402687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 6e-49; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 765 - 907
Target Start/End: Original strand, 11380361 - 11380501
Alignment:
Q  765 aaagaatggctggtagaatgaatcatggttcatcataagagattataattagaaaagagctgccatacagagttcaatataagaataaatacacattgag 864  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||    
T  11380361 aaagaatggctggtagaatgaatcatgattcatcataagagattataattagaa--gagctgccatacagagttcaatataagaataaatacacatttag 11380458  T
Q  865 gattggtatgattatctcgatcgcgttcactttcatatcgaag 907  Q
     ||||||||||| ||||| || | |||||||||| ||||||||    
T  11380459 aattggtatgatcatctcaattgagttcactttcgtatcgaag 11380501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 598 - 736
Target Start/End: Original strand, 5964184 - 5964324
Alignment:
Q  598 cttattatgaatagtaagatacattaccaataaaaatatgacattttaaagtaagaaaagcgatatagcaaacctataagctaatatatcagatactagt 697  Q
    |||||||| ||| ||||||||||||| ||||||||||||||||||||||   || | |||| | ||||||||| ||||| ||||||| |||  ||||| |    
T  5964184 cttattattaattgtaagatacattagcaataaaaatatgacattttaagtaaatacaagcaacatagcaaacttataaactaatatttcatctactaat 5964283  T
Q  698 ctc--aataatcgaggattaaagtcataaatcaaatgataa 736  Q
    |||  ||||||  | |||| || ||||||||||||||||||    
T  5964284 ctcaaaataatgtaagattcaactcataaatcaaatgataa 5964324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 590 - 646
Target Start/End: Original strand, 7747064 - 7747121
Alignment:
Q  590 gaatcgaa-cttattatgaatagtaagatacattaccaataaaaatatgacattttaa 646  Q
    |||||||| |||| ||||||| ||||||||||||| ||||||||||||||||||||||    
T  7747064 gaatcgaatcttactatgaatcgtaagatacattatcaataaaaatatgacattttaa 7747121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 613 - 685
Target Start/End: Original strand, 1872472 - 1872545
Alignment:
Q  613 aagatacattaccaataaaaatatgacattttaaagtaagaa-aagcgatatagcaaacctataagctaatata 685  Q
    |||||||||||| ||||||||||||| ||||| ||| || || ||| || ||||||||  ||||||||||||||    
T  1872472 aagatacattactaataaaaatatgatattttgaagcaaaaacaagtgacatagcaaaattataagctaatata 1872545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 600 - 649
Target Start/End: Original strand, 4433001 - 4433050
Alignment:
Q  600 tattatgaatagtaagatacattaccaataaaaatatgacattttaaagt 649  Q
    |||| ||||| ||||||||||||||||||||| ||| |||||||| ||||    
T  4433001 tattctgaattgtaagatacattaccaataaagatacgacattttcaagt 4433050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 611 - 644
Target Start/End: Complemental strand, 7379772 - 7379739
Alignment:
Q  611 gtaagatacattaccaataaaaatatgacatttt 644  Q
    |||||||||||||||||||||| |||||||||||    
T  7379772 gtaagatacattaccaataaaattatgacatttt 7379739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 4e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 602 - 750
Target Start/End: Complemental strand, 39646590 - 39646439
Alignment:
Q  602 ttatgaatagtaagatacattaccaataaaaatatgacattttaaagtaagaa-aagcgatatagcaaacctataagctaatatatcagatactagtctc 700  Q
    |||||||| ||||||| |||||||||||||| |||| |||||| |||||| || |||| | ||||||||||||||| ||||| |||||  ||||| ||||    
T  39646590 ttatgaatcgtaagatccattaccaataaaattatggcatttttaagtaaaaacaagcaacatagcaaacctataaactaatgtatcatctactaatctc 39646491  T
Q  701 aata--atcgaggattaaagtcataaatcaaatgataacagaagtgactggc 750  Q
    || |  ||  | |||| ||||| ||||||||||||||| | ||||| |||||    
T  39646490 aaaatgattcaagattgaagtcttaaatcaaatgataaaaaaagtggctggc 39646439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 627 - 686
Target Start/End: Original strand, 1978536 - 1978595
Alignment:
Q  627 ataaaaatatgacattttaaagtaagaaaagcgatatagcaaacctataagctaatatat 686  Q
    |||||||||||||||||| |||||||| ||| || ||||||||  |||||||||||||||    
T  1978536 ataaaaatatgacatttttaagtaagataagtgacatagcaaaattataagctaatatat 1978595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 648
Target Start/End: Complemental strand, 32117909 - 32117858
Alignment:
Q  598 cttattatgaatagtaagatacattaccaata-aaaatatgacattttaaag 648  Q
    |||||||| ||| ||||||||||||||||||| |||| ||||||||||||||    
T  32117909 cttattatcaattgtaagatacattaccaataaaaaaaatgacattttaaag 32117858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 600 - 733
Target Start/End: Complemental strand, 51395804 - 51395672
Alignment:
Q  600 tattatgaatagtaagatacattaccaataaaaatatgacattttaaagtaagaa-aagcgatatagcaaacctataagctaatatatcagatactagtc 698  Q
    ||||||||||  ||||||| ||| ||||||||||||||| ||||| |||||| || ||||   |||||||||||||||||| ||||||||  ||||| ||    
T  51395804 tattatgaatcataagatatatttccaataaaaatatgatatttttaagtaaaaacaagc--aatagcaaacctataagctcatatatcatctactaatc 51395707  T
Q  699 tcaataatcgaggattaaagtcataaatcaaatga 733  Q
    |||||| |  | |||  |||||||||| |||||||    
T  51395706 tcaatatttcaagatccaagtcataaaccaaatga 51395672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 598 - 655
Target Start/End: Original strand, 26576439 - 26576494
Alignment:
Q  598 cttattatgaatagtaagatacattaccaataaaaatatgacattttaaagtaagaaa 655  Q
    |||||||||||| ||||||||||||  ||||||||  |||||||||| ||||||||||    
T  26576439 cttattatgaattgtaagatacattgtcaataaaa--atgacatttttaagtaagaaa 26576494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 582 - 634
Target Start/End: Original strand, 7896322 - 7896375
Alignment:
Q  582 caaattgtgaatcgaa-cttattatgaatagtaagatacattaccaataaaaat 634  Q
    |||||||||||||||| ||||||||||||  ||||||| ||||| |||||||||    
T  7896322 caaattgtgaatcgaatcttattatgaatcttaagatatattactaataaaaat 7896375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 562 - 638
Target Start/End: Complemental strand, 36826757 - 36826680
Alignment:
Q  562 atggttatcaaatttagattcaaattgtgaatcgaa-cttattatgaatagtaagatacattaccaataaaaatatga 638  Q
    ||||||| |||||  |||| || ||||||||||||| ||||||||||||  ||||||||||||| |||||||||||||    
T  36826757 atggttaacaaatcgagatccatattgtgaatcgaatcttattatgaattataagatacattactaataaaaatatga 36826680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 598 - 646
Target Start/End: Original strand, 28029347 - 28029395
Alignment:
Q  598 cttattatgaatagtaagatacattaccaataaaaatatgacattttaa 646  Q
    ||||| |||||| |||||||||||||||||||||||||| |||||||||    
T  28029347 cttatcatgaattgtaagatacattaccaataaaaatataacattttaa 28029395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 606 - 647
Target Start/End: Original strand, 20553804 - 20553845
Alignment:
Q  606 gaatagtaagatacattaccaataaaaatatgacattttaaa 647  Q
    |||| ||||||||||||||| |||||||||||||||||||||    
T  20553804 gaatcgtaagatacattaccgataaaaatatgacattttaaa 20553845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 614 - 651
Target Start/End: Complemental strand, 3469353 - 3469316
Alignment:
Q  614 agatacattaccaataaaaatatgacattttaaagtaa 651  Q
    |||||||||||||||||| |||||||||||||||||||    
T  3469353 agatacattaccaataaagatatgacattttaaagtaa 3469316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 598 - 651
Target Start/End: Complemental strand, 19420429 - 19420376
Alignment:
Q  598 cttattatgaatagtaagatacattaccaataaaaatatgacattttaaagtaa 651  Q
    |||||||||||  |||||||||||||  ||||| ||||||||||||||||||||    
T  19420429 cttattatgaagcgtaagatacattattaataacaatatgacattttaaagtaa 19420376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 589 - 660
Target Start/End: Complemental strand, 7048781 - 7048709
Alignment:
Q  589 tgaatcgaa-cttattatgaatagtaagatacattaccaataaaaatatgacattttaaagtaagaaaagcga 660  Q
    ||||||||| |||||||| ||| |||| |||||||| || || |||||||||||||| |||||| ||||||||    
T  7048781 tgaatcgaatcttattataaattgtaatatacattaacattacaaatatgacattttcaagtaaaaaaagcga 7048709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 584 - 634
Target Start/End: Original strand, 9844237 - 9844288
Alignment:
Q  584 aattgtgaatcgaa-cttattatgaatagtaagatacattaccaataaaaat 634  Q
    |||||||||||||| |||||||||||| |||| | |||||||||||||||||    
T  9844237 aattgtgaatcgaatcttattatgaatcgtaaaacacattaccaataaaaat 9844288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 598 - 644
Target Start/End: Complemental strand, 24188250 - 24188204
Alignment:
Q  598 cttattatgaatagtaagatacattaccaataaaaatatgacatttt 644  Q
    |||||||||||  |||||||||||||||||||||| ||| |||||||    
T  24188250 cttattatgaaccgtaagatacattaccaataaaattataacatttt 24188204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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