View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2024-Insertion-23 (Length: 90)
Name: NF2024-Insertion-23
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024-Insertion-23 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 75; Significance: 4e-35; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 4e-35
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 1580844 - 1580926
Alignment:
| Q |
8 |
atgtcgagatcaagatcaaagagttgaatggaattgatatcaaacatatcatgtgtaaggaattgtttgattcagatctcagt |
90 |
Q |
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| T |
1580844 |
atgtcgagatcaagatcaaagagttgaatggcactgatatcaaacatatcatgtgtaaggaattgtttgattcagatctcagt |
1580926 |
T |
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Target: chr5; HSP #2
Raw Score: 75; E-Value: 4e-35
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 1603971 - 1603889
Alignment:
| Q |
8 |
atgtcgagatcaagatcaaagagttgaatggaattgatatcaaacatatcatgtgtaaggaattgtttgattcagatctcagt |
90 |
Q |
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| T |
1603971 |
atgtcgagatcaagatcaaagagttgaatggcactgatatcaaacatatcatgtgtaaggaattgtttgattcagatctcagt |
1603889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 1587349 - 1587425
Alignment:
| Q |
13 |
gagatcaagatcaaagagttgaatggaattgatatcaaacatatcatgtgtaaggaattgtttgattcagatctcag |
89 |
Q |
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| T |
1587349 |
gagaacaagatcaaagagtttaatggcactgatatcaaaaatatcatgtgtaaaaaattgtctgcgtcagatctcag |
1587425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 1590874 - 1590822
Alignment:
| Q |
13 |
gagatcaagatcaaagagttgaatggaattgatatcaaacatatcatgtgtaa |
65 |
Q |
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| T |
1590874 |
gagaacaagatcaaagagtttaatggcactgatatcaaaaatatcatgtgtaa |
1590822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 19270457 - 19270394
Alignment:
| Q |
13 |
gagatcaagatcaaagagttgaatggaattgatatcaaacatatcatgtgtaaggaattgtttg |
76 |
Q |
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| T |
19270457 |
gagaacaagatcaaagagttgaatggcactgatatcaaatatatcatgggtaaaaaattgtttg |
19270394 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 39616133 - 39616064
Alignment:
| Q |
7 |
aatgtcgagatcaagatcaaagagttgaatggaattgatatcaaacatatcatgtgtaaggaattgtttg |
76 |
Q |
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| T |
39616133 |
aatgtcaagaacaagatcaaggagttgaatggcactgatatcagatatatcatgtcaaagaaattgtttg |
39616064 |
T |
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