View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2024-Insertion-5 (Length: 868)
Name: NF2024-Insertion-5
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024-Insertion-5 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 532; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 153 - 868
Target Start/End: Original strand, 33967212 - 33967921
Alignment:
| Q |
153 |
aagattaaaactctaaacaaagtatttggtcatatattgtggtcctatccgactcgagagattagtctgtgtgattgtgcgctgaggatatgtaggttac |
252 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33967212 |
aagattaaaactctaaacaaaatatttggtcatatattatggtcttatctaactcgagagattagtctgtgtgattgtgcgctgaggatatgtaggttac |
33967311 |
T |
|
| Q |
253 |
attatagtagtaatgtttatggtacttatttttggttgaaaagtgaagcaatgacagaagtatgtcacgggtagttgtagtgtcatacatgtagaagaga |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33967312 |
attatagtagtaatgtttatggtacttatttttggttgaaaagtgaagcaatgacagaagtatgtcacgggtagttgtagtgtcatacatgtagaagaga |
33967411 |
T |
|
| Q |
353 |
caatctagaccacaagacaggataggttgaactttttctgtgtataaaaacaaaacattgtcttgtacaaatatttggccgacttatgttatttgaggat |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33967412 |
caatctagaccacaagacaggataggttgaactttttctgtgtataaaaacaaaacattgtcttgtacaaatatttggccgacttatgttatttgaggat |
33967511 |
T |
|
| Q |
453 |
agaaattaattggcattgtatttttatactgtataaaaataatttatttgtaattttttatgtgacaaaagaaaataaagagcaggnnnnnnnttgttta |
552 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
33967512 |
agaaattaattggcattgtatttttatactgtataaaaataatttatttgtaatttttgatgtgacaaaagaaaataaagagtaggaaaaaaattgttta |
33967611 |
T |
|
| Q |
553 |
tgtaacatttctctatttgtcnnnnnnnnnnnnnnnttattagttaatgttgtttgtctggtgttattgctccaaaggttacttcctatttttgtgttat |
652 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33967612 |
tgtaacatttctctatttgtc---aaaaaaaaaaaattattagttaatgttgtttgtctggtgttattgctcgaaaggttacttcctatttttgtgttat |
33967708 |
T |
|
| Q |
653 |
gatgaaaatagtattcaaattaagataatggaatgggggtaggttatgggtcccatttaatagtattgttactatgtactagtttggaaaccaattgggc |
752 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33967709 |
gatgaaaatactattcaaattaagattatggaat-ggggtaggttat-ggtcccatttaatagtattgttactatgtactagtttggaaaccaatt-ggc |
33967805 |
T |
|
| Q |
753 |
catattgtatatggtgcataaacaaacgaatacatttgtagtttatataactacccaatcagatgnnnnnnntaagtgtaaacacggctgcatagactaa |
852 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |||||||||||||||||||||| ||| |
|
|
| T |
33967806 |
catattgtatatggtgcataaacaaacgaatacatttgtagtttatataactgtccaattagatgaaaaaaattagtgtaaacacggctgcatagattaa |
33967905 |
T |
|
| Q |
853 |
ttcgtcgagtcggatg |
868 |
Q |
| |
|
||| |||||| ||||| |
|
|
| T |
33967906 |
ttcatcgagttggatg |
33967921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 6 - 170
Target Start/End: Original strand, 33967032 - 33967196
Alignment:
| Q |
6 |
catgtttgacattcttaagagaagattgtgaaaatgaaaaaatgatggagaatggtatgttttagtttggtttatatatactagttatgtttccaaaatg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33967032 |
catgtttgacattcttaagagaagattgtgaaaatgaaaaaatgatggagaatggtatgttttggtttggtttatatatactagttatgtttccaaaatg |
33967131 |
T |
|
| Q |
106 |
cgcgtaatcgtaggttttggtttcgaattcagtcatagaactgcaataagattaaaactctaaac |
170 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33967132 |
cgcgtaatcataggttttggtttcgaattcagtcatagaactgcaataagattaaaactctaaac |
33967196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 10413236 - 10413204
Alignment:
| Q |
188 |
attgtggtcctatccgactcgagagattagtct |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
10413236 |
attgtggtcctatccgactcgagagattagtct |
10413204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University