View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2024-Insertion-6 (Length: 719)
Name: NF2024-Insertion-6
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024-Insertion-6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 650; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 8 - 717
Target Start/End: Original strand, 49423379 - 49424087
Alignment:
| Q |
8 |
ggatctaggtaattgaaatcataaggaagaataaagaggttgacaagttttaaggataannnnnnnncttaacatatacaaggagacaaggttagcagtt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
49423379 |
ggatctaggtaattgaaatcataaggaagaataaagaggttgacaagttttaaggataattttttttcttaacatatacaaggagacaaggttagcagtt |
49423478 |
T |
|
| Q |
108 |
caatccaccaaacccagcagctgcatggtagaacaagtaaaacagaggatagatgaaccattatttaaactcagcgggcaaaaatcaattgatgggaata |
207 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49423479 |
caatccatcaaacctagcagctgcatggtagaacaagtaaaacagaggatagatgaaccattatttaaactcagcgggcaaaaatcaattgatggaaata |
49423578 |
T |
|
| Q |
208 |
gtttgggagatcaactactcgtttaatctttgtccatgctgtaaatcgagtcatggcagttagaaaggcttctgtgagcttggtgtttgtgtgtctgttg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49423579 |
gtttgggagatcaactactcgtttaatctttgtccatgctgtaaatcgagtcatggcagttagaaaggcttctgtgagcttggtgtttgtgtgtctgttg |
49423678 |
T |
|
| Q |
308 |
cttttatatttcatgaaataatttgctcgagtgcatgaagttgtaacgtgatattgcaaatctgtaatggccgaaattgtacgagcataaaaaatgttat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49423679 |
cttttatatttcatgaaataatttgctcgagtgcatgaagttgtaacgtgatattgcaaatctgtaatggccgaaattgtacgagcataaaaaatgttat |
49423778 |
T |
|
| Q |
408 |
ccctaatgtcttgaaagttgaatctatcaaccatctccatctttaagtttaaaatgaaggttgaacaattgaattaaaacactgaacaagcttccccaaa |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49423779 |
ccctaatgtcttgaaagttgaatctatcaaccatctccaactttaagtttaaaatgaaggttgaacaattgaattaaaacactgaacaagcttccccaaa |
49423878 |
T |
|
| Q |
508 |
tggcttgttaagacagttcaaaagcttgattctcatttccattattttttgaatttattagacctataagacgtgagtttctcggttctccacaggcata |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49423879 |
tggcttgttaagacagttcaaaagcttgattctca-ttccattattttttgaatttattagacctataagacgtgagtttctcggttctccacaggcata |
49423977 |
T |
|
| Q |
608 |
ctaagtattcaaggagcagttgatacaaacctgtcattagtaatctggataatcactccattcatgaaaccaccatggaacggaagtctccgtaagcgcc |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49423978 |
ctaagtattcaaggagcagttgatacaaacctgtcattagtaatctggataatcgctccattcatgaaaccaccatggaacggaagtctccgtaagcgcc |
49424077 |
T |
|
| Q |
708 |
aacaaagttg |
717 |
Q |
| |
|
| | |||||| |
|
|
| T |
49424078 |
atccaagttg |
49424087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 298 - 533
Target Start/End: Original strand, 49425826 - 49426060
Alignment:
| Q |
298 |
gtgtctgttgcttttatatttcatgaaataatttgctcgagtgcatgaagttgtaacgtgatattgcaaatctgtaatggccgaaattgtacgagcataa |
397 |
Q |
| |
|
|||| ||| |||||||| ||| |||||||||||||||||||| |||||||||||||| ||| ||||| ||| || ||| | |||||| || |||| ||| |
|
|
| T |
49425826 |
gtgtttgtggcttttatgttttatgaaataatttgctcgagtacatgaagttgtaacatgacattgccaatatg-aattggcgaaatcttaagagcgtaa |
49425924 |
T |
|
| Q |
398 |
aaaatgttatccctaatgtcttgaaagttgaatctatcaaccatctccatctttaagtttaaaatgaaggttgaacaattgaattaaaacactgaacaag |
497 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||| ||||||||| | || |||||||| | ||||||||| |||||||| ||| ||||||||| |
|
|
| T |
49425925 |
gaaatgctatccctaatgtcttgaaagttgaaactatgaaccatctcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaag |
49426024 |
T |
|
| Q |
498 |
cttccccaaatggcttgttaagacagttcaaaagct |
533 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| |
|
|
| T |
49426025 |
tttccccaaatgattcattaagacagttcaaaagct |
49426060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 397 - 544
Target Start/End: Complemental strand, 43363293 - 43363148
Alignment:
| Q |
397 |
aaaaatgttatccctaatgtcttgaaagttgaatctatcaaccatctccatctttaagtttaaaatgaaggttgaacaattgaattaaaacactgaacaa |
496 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| || ||||||| | | |||||||| || |||||||||||||| | ||||||| ||||| |
|
|
| T |
43363293 |
aaaaatgttatcccttatgtcttgaaagttgaatctattaatcatctcctacat--agtttaaactggttgttgaacaattgaagtgaaacactaaacaa |
43363196 |
T |
|
| Q |
497 |
gcttccccaaatggcttgttaagacagttcaaaagcttgattctcatt |
544 |
Q |
| |
|
||||||||||||| || |||||||| ||||||| ||| |||||||| |
|
|
| T |
43363195 |
gcttccccaaatgactcattaagacaattcaaaaacttccttctcatt |
43363148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 193 - 298
Target Start/End: Original strand, 49431982 - 49432085
Alignment:
| Q |
193 |
caattgatgggaatagtttgggagatcaactactcgtttaatctttgtccatgctgtaaatcgagtcatggcagttagaaaggcttctgtgagcttggtg |
292 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||| | ||||| |||||| ||||| ||||||||||||||||| ||| ||||| ||||| ||| |
|
|
| T |
49431982 |
caattgatgaaaattgtttgggagatcaactactcgtttattttttgtacatgctttaaat-gagtcatggcagttagataggattctg-cagcttcgtg |
49432079 |
T |
|
| Q |
293 |
tttgtg |
298 |
Q |
| |
|
|||||| |
|
|
| T |
49432080 |
tttgtg |
49432085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 623 - 703
Target Start/End: Complemental strand, 49416656 - 49416576
Alignment:
| Q |
623 |
gcagttgatacaaacctgtcattagtaatctggataatcactccattcatgaaaccaccatggaacggaagtctccgtaag |
703 |
Q |
| |
|
||||||||||||||| | ||| | |||||||||||||||||||| ||||||||||||||| | | |||||||||| ||||| |
|
|
| T |
49416656 |
gcagttgatacaaacgtatcaatggtaatctggataatcactccgttcatgaaaccaccacgaagcggaagtctctgtaag |
49416576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 333 - 441
Target Start/End: Original strand, 17640922 - 17641030
Alignment:
| Q |
333 |
ctcgagtgcatgaagttgtaacgtgatattgcaaatctgtaatggccgaaattgtacgagcataaaaaatgt----tatccctaatgtcttgaaagttga |
428 |
Q |
| |
|
|||||||||| |||||||||| ||| |||||||||||| |||||| ||| ||| |||||||| | |||| ||||||||| ||||||||||||| |
|
|
| T |
17640922 |
ctcgagtgcacaaagttgtaacatgacattgcaaatctgaaatggc--aaa--gtaagagcataagatatgtacgttatccctaaattcttgaaagttga |
17641017 |
T |
|
| Q |
429 |
atctatcaaccat |
441 |
Q |
| |
|
||||||||||||| |
|
|
| T |
17641018 |
atctatcaaccat |
17641030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 641 - 688
Target Start/End: Complemental strand, 43363025 - 43362976
Alignment:
| Q |
641 |
tcattagtaatctggata--atcactccattcatgaaaccaccatggaac |
688 |
Q |
| |
|
|||||||||||||||||| |||||| | ||||||||||||||||||||| |
|
|
| T |
43363025 |
tcattagtaatctggatataatcacttctttcatgaaaccaccatggaac |
43362976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 49425674 - 49425711
Alignment:
| Q |
103 |
cagttcaatccaccaaacccagcagctgcatggtagaa |
140 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
49425674 |
cagttcaatccaccaaacccagcagttgcatgttagaa |
49425711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 49431904 - 49431953
Alignment:
| Q |
17 |
taattgaaatcataaggaagaataaagaggttgacaagttttaaggataa |
66 |
Q |
| |
|
|||||||| ||||||| ||| | ||||| ||||||||||||||||||||| |
|
|
| T |
49431904 |
taattgaagtcataagcaagcaaaaagaagttgacaagttttaaggataa |
49431953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University