View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2024-Insertion-8 (Length: 654)

Name: NF2024-Insertion-8
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2024-Insertion-8
NF2024-Insertion-8
[»] chr3 (10 HSPs)
chr3 (8-654)||(14338007-14338660)
chr3 (451-523)||(20503479-20503553)
chr3 (458-511)||(26492183-26492236)
chr3 (451-509)||(40993306-40993364)
chr3 (458-502)||(55401112-55401156)
chr3 (459-509)||(10954982-10955032)
chr3 (481-531)||(49179716-49179768)
chr3 (465-509)||(3865704-3865748)
chr3 (458-502)||(7171538-7171582)
chr3 (459-511)||(25093530-25093582)
[»] chr7 (14 HSPs)
chr7 (458-531)||(5937399-5937474)
chr7 (451-523)||(21880166-21880240)
chr7 (449-509)||(7197266-7197326)
chr7 (459-509)||(25956475-25956525)
chr7 (465-509)||(33994242-33994286)
chr7 (451-509)||(598238-598296)
chr7 (487-532)||(10702551-10702597)
chr7 (481-531)||(1885579-1885631)
chr7 (458-509)||(8234176-8234227)
chr7 (451-502)||(21864845-21864896)
chr7 (451-509)||(7973094-7973152)
chr7 (480-509)||(7438736-7438765)
chr7 (458-502)||(15680846-15680890)
chr7 (481-517)||(25822677-25822713)
[»] chr4 (18 HSPs)
chr4 (458-531)||(13307883-13307958)
chr4 (451-531)||(44362672-44362754)
chr4 (451-509)||(29205474-29205532)
chr4 (452-509)||(12797310-12797367)
chr4 (458-523)||(21945517-21945584)
chr4 (475-530)||(13117436-13117493)
chr4 (459-509)||(16073424-16073474)
chr4 (451-509)||(23292957-23293015)
chr4 (458-499)||(4157189-4157230)
chr4 (458-499)||(4157476-4157517)
chr4 (458-502)||(34306782-34306826)
chr4 (213-283)||(21570830-21570900)
chr4 (459-509)||(28964227-28964277)
chr4 (451-509)||(49431056-49431114)
chr4 (465-502)||(35157970-35158007)
chr4 (482-524)||(37496717-37496761)
chr4 (451-491)||(30982838-30982878)
chr4 (465-509)||(54580008-54580052)
[»] chr2 (15 HSPs)
chr2 (451-502)||(18840984-18841035)
chr2 (459-531)||(43585984-43586058)
chr2 (451-509)||(2438690-2438748)
chr2 (452-509)||(30404822-30404879)
chr2 (451-511)||(15972901-15972961)
chr2 (460-529)||(24067758-24067829)
chr2 (475-532)||(37491850-37491909)
chr2 (471-509)||(5040764-5040802)
chr2 (448-502)||(28596506-28596560)
chr2 (481-531)||(33884057-33884109)
chr2 (451-507)||(21091755-21091811)
chr2 (458-509)||(37559007-37559058)
chr2 (459-505)||(12224257-12224303)
chr2 (487-530)||(37211892-37211937)
chr2 (486-531)||(13501084-13501131)
[»] chr8 (17 HSPs)
chr8 (451-509)||(31557026-31557084)
chr8 (460-525)||(42874534-42874601)
chr8 (209-268)||(29705884-29705943)
chr8 (451-511)||(44462166-44462226)
chr8 (451-511)||(44469699-44469759)
chr8 (451-502)||(5813629-5813680)
chr8 (451-502)||(33405355-33405406)
chr8 (459-509)||(18407749-18407799)
chr8 (480-531)||(27733853-27733906)
chr8 (451-509)||(36450725-36450783)
chr8 (481-531)||(24295138-24295190)
chr8 (498-531)||(25104613-25104646)
chr8 (465-523)||(40332205-40332265)
chr8 (473-509)||(4948682-4948718)
chr8 (451-507)||(20679366-20679422)
chr8 (486-531)||(26915246-26915293)
chr8 (486-527)||(31119097-31119140)
[»] chr1 (12 HSPs)
chr1 (451-509)||(1815287-1815345)
chr1 (451-509)||(40258904-40258962)
chr1 (466-509)||(38078647-38078690)
chr1 (451-509)||(18190079-18190137)
chr1 (458-502)||(22515865-22515909)
chr1 (458-502)||(46348361-46348405)
chr1 (470-509)||(51410055-51410094)
chr1 (459-509)||(18337359-18337409)
chr1 (459-500)||(21530728-21530769)
chr1 (460-509)||(37598861-37598910)
chr1 (470-502)||(22881606-22881638)
chr1 (327-387)||(33152696-33152756)
[»] chr6 (20 HSPs)
chr6 (451-502)||(32978870-32978921)
chr6 (476-531)||(6751878-6751935)
chr6 (451-509)||(34595164-34595222)
chr6 (481-531)||(19369823-19369875)
chr6 (452-509)||(28152128-28152185)
chr6 (451-523)||(28715309-28715383)
chr6 (451-531)||(32225361-32225443)
chr6 (465-519)||(30851620-30851674)
chr6 (459-500)||(4877982-4878023)
chr6 (458-533)||(26402658-26402737)
chr6 (451-507)||(16833340-16833396)
chr6 (458-497)||(24645523-24645562)
chr6 (488-531)||(10031576-10031621)
chr6 (481-511)||(15489733-15489763)
chr6 (481-536)||(22745958-22746015)
chr6 (327-389)||(28077215-28077277)
chr6 (471-529)||(7377987-7378047)
chr6 (460-509)||(7977810-7977859)
chr6 (460-509)||(27904016-27904065)
chr6 (459-491)||(18367895-18367927)
[»] scaffold0083 (1 HSPs)
scaffold0083 (458-509)||(45508-45559)
[»] chr5 (17 HSPs)
chr5 (451-502)||(42893397-42893448)
chr5 (486-531)||(15302531-15302576)
chr5 (482-532)||(30080503-30080555)
chr5 (475-511)||(19167571-19167607)
chr5 (470-509)||(15884018-15884057)
chr5 (451-523)||(27932249-27932323)
chr5 (451-523)||(28588645-28588719)
chr5 (459-523)||(30502367-30502433)
chr5 (459-523)||(30542710-30542776)
chr5 (451-509)||(21191027-21191085)
chr5 (459-509)||(21576724-21576774)
chr5 (339-389)||(22976404-22976454)
chr5 (339-385)||(33695359-33695405)
chr5 (452-509)||(23012380-23012437)
chr5 (481-509)||(8420057-8420085)
chr5 (475-528)||(16207586-16207641)
chr5 (465-509)||(42029782-42029826)
[»] scaffold0652 (1 HSPs)
scaffold0652 (451-509)||(433-491)
[»] scaffold0314 (1 HSPs)
scaffold0314 (480-531)||(8954-9007)
[»] scaffold0050 (1 HSPs)
scaffold0050 (452-509)||(70308-70365)
[»] scaffold0053 (1 HSPs)
scaffold0053 (458-502)||(8835-8879)
[»] scaffold0512 (1 HSPs)
scaffold0512 (460-502)||(5016-5058)
[»] scaffold0697 (1 HSPs)
scaffold0697 (459-500)||(1683-1724)


Alignment Details
Target: chr3 (Bit Score: 518; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 8 - 654
Target Start/End: Original strand, 14338007 - 14338660
Alignment:
Q  8 ggatcaactcctgctgaaattcacttagctttgcatcttcatttgcctctccctttcttaactttatcggggttggaagctgttctgcaccaaagtaccg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14338007 ggatcaactcctgctgaaattcacttagctttgcatcttcatttgcctctccctttcttaactttatcggggtcggaagctgttctgcaccaaagtaccg 14338106  T
Q  108 atatcaagaatcagcgaagagcgaaacatgttcgaaagatattgttagaaagatttaattcatacatacggcaaatgtgaagagtttgtatactgtcaat 207  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14338107 atatcaagaatcagcgaagagcaaaacatgttcgaaagatattgttagaaagatttaattcatacatacggcaaatgtaaagagtttgtatactgtcaat 14338206  T
Q  208 taattataaccgtcaaattattataaacgtttgaattctatcattaccacttctgaagtcagacacatgattggttatgctatataatttacttatttaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14338207 taattataaccgtcaaattattataaacgtttgaattctatcattaccacttctgaagtcagacacatgattggttatgctatataatttacttatttaa 14338306  T
Q  308 tgctttgagaattgattttggctctgttagataaatatagtggatagttgataagctaccttatagtttatagcggatagctaataagctagctgatggc 407  Q
    ||||||||||||||||||||| |||||| | ||||||||| ||||| |||||||||||||| |||| ||||||||||||||| |||||||||||||||||    
T  14338307 tgctttgagaattgattttggttctgtttggtaaatatagcggataattgataagctacctgatagcttatagcggatagctgataagctagctgatggc 14338406  T
Q  408 cttaccaaacagagcccttaa----ttgttgaagcaaaacttttggagtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacat 503  Q
    |||||||||||||||||||||    ||||||||| |||||||||||||||||| ||||||||| | ||||||||||||||||||||| |||| |||||||    
T  14338407 cttaccaaacagagcccttaactgtttgttgaaggaaaacttttggagtgtcccggtgtccgatacgtgtcgtgtctgacaccgacatttgtgattacat 14338506  T
Q  504 tgaat--tgtcattttctcaaaattttatcatgtctgtgtc-gttatcggtgtccgtgtgtgtgttcgtgcttcaaagaaatgagcaactaacctgggca 600  Q
    |||||  ||||||||| ||||||||||||| |||||||||| ||   |||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  14338507 tgaattatgtcattttttcaaaattttatcgtgtctgtgtctgtgtccggtgtccgtgtatgtgttcgtgcttcaaagaagtgagcaactaacctgggca 14338606  T
Q  601 atcagttctgggttctgtccttgtttgtacaataccttcaaaggttccagccca 654  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14338607 atcagttctgggttctgtccttatttgtacaataccttcaaaggttccagccca 14338660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 451 - 523
Target Start/End: Complemental strand, 20503553 - 20503479
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 523  Q
    |||||| |||||| |||||||||||||||  ||||||||||||||||||||| |||||  ||||||||| |||||    
T  20503553 gtgtcccggtgtcagacatgtgtcgtgtccaacaccgacacttgtaattacactgaattatgtcattttttcaaa 20503479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 458 - 511
Target Start/End: Original strand, 26492183 - 26492236
Alignment:
Q  458 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaattgt 511  Q
    |||||| ||||||||||||||| |||||||| ||||||||||||| ||||||||    
T  26492183 ggtgtcagacatgtgtcgtgtccgacaccgatacttgtaattacactgaattgt 26492236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 509
Target Start/End: Original strand, 40993306 - 40993364
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||||| |||||| ||||||||||||||| ||||||||||| | |||||||| ||||||    
T  40993306 gtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaatt 40993364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 502
Target Start/End: Complemental strand, 55401156 - 55401112
Alignment:
Q  458 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 502  Q
    |||||| |||| |||||||||| ||||||||||||||||||||||    
T  55401156 ggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 55401112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 459 - 509
Target Start/End: Complemental strand, 10955032 - 10954982
Alignment:
Q  459 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    ||||| |||| |||||||||| ||||||||||||||| |||||| ||||||    
T  10955032 gtgtcggacacgtgtcgtgtccgacaccgacacttgtgattacactgaatt 10954982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 531
Target Start/End: Original strand, 49179716 - 49179768
Alignment:
Q  481 gacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 531  Q
    ||||||||||||||| ||||||| ||||  ||||| |||||||||||||||||    
T  49179716 gacaccgacacttgtgattacatcgaattatgtcactttctcaaaattttatc 49179768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 465 - 509
Target Start/End: Complemental strand, 3865748 - 3865704
Alignment:
Q  465 gacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||| |||||||||| |||||||||||||||||||| | ||||||    
T  3865748 gacacgtgtcgtgtcagacaccgacacttgtaattatactgaatt 3865704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 458 - 502
Target Start/End: Complemental strand, 7171582 - 7171538
Alignment:
Q  458 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 502  Q
    |||||| |||| |||||||||| |||||| |||||||||||||||    
T  7171582 ggtgtcggacacgtgtcgtgtccgacaccaacacttgtaattaca 7171538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 459 - 511
Target Start/End: Complemental strand, 25093582 - 25093530
Alignment:
Q  459 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaattgt 511  Q
    ||||| ||||||||| ||||| ||||||||||| | |||||||| ||||||||    
T  25093582 gtgtcggacatgtgttgtgtccgacaccgacacatataattacactgaattgt 25093530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 458 - 531
Target Start/End: Original strand, 5937399 - 5937474
Alignment:
Q  458 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 531  Q
    |||||||||||||| ||||| | ||||| ||||||||| ||||||||||||  |||||||||||||||||||||||    
T  5937399 ggtgtccgacatgtatcgtgaccgacacagacacttgtgattacattgaattatgtcattttctcaaaattttatc 5937474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 451 - 523
Target Start/End: Complemental strand, 21880240 - 21880166
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 523  Q
    |||||| |||||| ||||||||||||||| |||||||||||||||||||||| |||||  ||| |||||||||||    
T  21880240 gtgtcctggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtaattttctcaaa 21880166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 449 - 509
Target Start/End: Original strand, 7197266 - 7197326
Alignment:
Q  449 gagtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||| ||| |||||| ||||||||| ||||| |||||||||||||||||||||||||||||    
T  7197266 gagtatcccggtgtcggacatgtgttgtgtccgacaccgacacttgtaattacattgaatt 7197326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 459 - 509
Target Start/End: Complemental strand, 25956525 - 25956475
Alignment:
Q  459 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||||||||||    
T  25956525 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaatt 25956475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 465 - 509
Target Start/End: Complemental strand, 33994286 - 33994242
Alignment:
Q  465 gacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  33994286 gacatgtgtcgtgtctgacaccgacacttgtaattgcactgaatt 33994242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 509
Target Start/End: Complemental strand, 598296 - 598238
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||||| |||||| |||| ||||||||||||||||||||||||  ||||||||| ||||    
T  598296 gtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacttacaattacatttaatt 598238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 487 - 532
Target Start/End: Original strand, 10702551 - 10702597
Alignment:
Q  487 gacacttgtaattacattgaat-tgtcattttctcaaaattttatca 532  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  10702551 gacacttataattacattgaatatgtcattttctcaaaattttatca 10702597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 481 - 531
Target Start/End: Complemental strand, 1885631 - 1885579
Alignment:
Q  481 gacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 531  Q
    ||||||||||||||| ||||||||||||  ||||||||| |||||||||||||    
T  1885631 gacaccgacacttgtgattacattgaattatgtcattttttcaaaattttatc 1885579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 509
Target Start/End: Complemental strand, 8234227 - 8234176
Alignment:
Q  458 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||||| ||||||||||||||| ||||||| ||||||||| |||| ||||||    
T  8234227 ggtgtcggacatgtgtcgtgtccgacaccggcacttgtaactacactgaatt 8234176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 502
Target Start/End: Complemental strand, 21864896 - 21864845
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 502  Q
    |||||| |||||| |||| |||||||||| |||| |||||||||||||||||    
T  21864896 gtgtcccggtgtcggacacgtgtcgtgtccgacagcgacacttgtaattaca 21864845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 509
Target Start/End: Original strand, 7973094 - 7973152
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||||| | |||| |||||||||||||||| ||||| ||| ||||||||||||| ||||    
T  7973094 gtgtcccgatgtcggacatgtgtcgtgtctcacaccaacatttgtaattacattaaatt 7973152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 509
Target Start/End: Complemental strand, 7438765 - 7438736
Alignment:
Q  480 tgacaccgacacttgtaattacattgaatt 509  Q
    ||||||||||||||||||||||||||||||    
T  7438765 tgacaccgacacttgtaattacattgaatt 7438736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 458 - 502
Target Start/End: Complemental strand, 15680890 - 15680846
Alignment:
Q  458 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 502  Q
    |||||| |||| |||||||||| ||||||||||||| ||||||||    
T  15680890 ggtgtcggacacgtgtcgtgtccgacaccgacacttataattaca 15680846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 481 - 517
Target Start/End: Complemental strand, 25822713 - 25822677
Alignment:
Q  481 gacaccgacacttgtaattacattgaattgtcatttt 517  Q
    |||||||||||||||||||||| |||||||| |||||    
T  25822713 gacaccgacacttgtaattacactgaattgtgatttt 25822677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 458 - 531
Target Start/End: Complemental strand, 13307958 - 13307883
Alignment:
Q  458 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 531  Q
    |||||| |||| |||||||||| |||||| |||||||| ||||||||||||  |||||||||||||||||||||||    
T  13307958 ggtgtctgacacgtgtcgtgtccgacaccaacacttgtgattacattgaattatgtcattttctcaaaattttatc 13307883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 451 - 531
Target Start/End: Complemental strand, 44362754 - 44362672
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 531  Q
    |||||| | ||||||| | ||||||||||||||||| |||||||| |||||||| |||  |||||||||||||||||||||||    
T  44362754 gtgtcccgatgtccgatacgtgtcgtgtctgacaccaacacttgtgattacattaaattatgtcattttctcaaaattttatc 44362672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 451 - 509
Target Start/End: Complemental strand, 29205532 - 29205474
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||||| |||||| |||||||||||||||  ||||||||||||||||||||| ||||||    
T  29205532 gtgtcccggtgtcggacatgtgtcgtgtccaacaccgacacttgtaattacactgaatt 29205474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 452 - 509
Target Start/End: Original strand, 12797310 - 12797367
Alignment:
Q  452 tgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    ||||| |||||| ||||||| ||||||| |||||||||||||||||||||| ||||||    
T  12797310 tgtcccggtgtcagacatgtatcgtgtccgacaccgacacttgtaattacactgaatt 12797367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 523
Target Start/End: Complemental strand, 21945584 - 21945517
Alignment:
Q  458 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 523  Q
    |||||| |||||||||| |||| |||||||||||||||||||||| |||||  ||||||||| |||||    
T  21945584 ggtgtcggacatgtgtcatgtccgacaccgacacttgtaattacactgaattatgtcattttttcaaa 21945517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 530
Target Start/End: Complemental strand, 13117493 - 13117436
Alignment:
Q  475 gtgtctgacaccgacacttgtaattacattgaa--ttgtcattttctcaaaattttat 530  Q
    ||||| ||||||||||||||| |||||||||||  ||||||||||||| |||||||||    
T  13117493 gtgtccgacaccgacacttgtgattacattgaattttgtcattttctccaaattttat 13117436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 509
Target Start/End: Complemental strand, 16073474 - 16073424
Alignment:
Q  459 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    ||||| ||||||| ||||||| |||||||||||||||||||||| ||||||    
T  16073474 gtgtcggacatgtatcgtgtccgacaccgacacttgtaattacactgaatt 16073424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 509
Target Start/End: Original strand, 23292957 - 23293015
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||||| |||||| |||| |||||||||| |||||||||||||||||||| | ||||||    
T  23292957 gtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattatactgaatt 23293015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 458 - 499
Target Start/End: Complemental strand, 4157230 - 4157189
Alignment:
Q  458 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 499  Q
    |||||| ||||||||||||||| |||||||||||||||||||    
T  4157230 ggtgtcggacatgtgtcgtgtccgacaccgacacttgtaatt 4157189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 458 - 499
Target Start/End: Complemental strand, 4157517 - 4157476
Alignment:
Q  458 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 499  Q
    |||||| ||||||||||||||| |||||||||||||||||||    
T  4157517 ggtgtcggacatgtgtcgtgtccgacaccgacacttgtaatt 4157476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 502
Target Start/End: Original strand, 34306782 - 34306826
Alignment:
Q  458 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 502  Q
    |||||| |||| |||||||||| ||||||||||||||||||||||    
T  34306782 ggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 34306826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 213 - 283
Target Start/End: Original strand, 21570830 - 21570900
Alignment:
Q  213 ataaccgtcaaattattataaacgtttgaattctatcattaccacttctgaagtcagacacatgattggtt 283  Q
    |||||||||| || |||| ||| |||||| || |||||| || |||||| |||||| ||||||||||||||    
T  21570830 ataaccgtcacataattagaaatgtttgacttttatcatgacgacttctaaagtcacacacatgattggtt 21570900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 459 - 509
Target Start/End: Original strand, 28964227 - 28964277
Alignment:
Q  459 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    ||||| || |||||||||||| ||||| |||||||||||||||| ||||||    
T  28964227 gtgtcggatatgtgtcgtgtccgacacagacacttgtaattacactgaatt 28964277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 509
Target Start/End: Complemental strand, 49431114 - 49431056
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||||| |||||  |||| |||||||||| ||||||||||||| |||||||| ||||||    
T  49431114 gtgtcccggtgttggacacgtgtcgtgtccgacaccgacacttttaattacactgaatt 49431056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 502
Target Start/End: Original strand, 35157970 - 35158007
Alignment:
Q  465 gacatgtgtcgtgtctgacaccgacacttgtaattaca 502  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  35157970 gacatgtgtcgtgtcagacaccgacacttataattaca 35158007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 37496761 - 37496717
Alignment:
Q  482 acaccgacacttgtaattacattgaat--tgtcattttctcaaaa 524  Q
    |||||||||||||| ||||||||||||  ||||||||||||||||    
T  37496761 acaccgacacttgtgattacattgaattatgtcattttctcaaaa 37496717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 491
Target Start/End: Original strand, 30982838 - 30982878
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacac 491  Q
    |||||| |||||| |||| ||||||||||||||||||||||    
T  30982838 gtgtcccggtgtcggacacgtgtcgtgtctgacaccgacac 30982878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 465 - 509
Target Start/End: Original strand, 54580008 - 54580052
Alignment:
Q  465 gacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||| |||||||||| ||||||||||||| |||||||| ||||||    
T  54580008 gacacgtgtcgtgtccgacaccgacacttataattacactgaatt 54580052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 451 - 502
Target Start/End: Original strand, 18840984 - 18841035
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 502  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  18840984 gtgtcccggtgtcggacatgtgtcgtgtctgacaccgacacttgtaattaca 18841035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 459 - 531
Target Start/End: Original strand, 43585984 - 43586058
Alignment:
Q  459 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 531  Q
    ||||| |||| || ||||||| ||||||||||||||| ||||||||||||  |||||||||||||||||||||||    
T  43585984 gtgtctgacacgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcattttctcaaaattttatc 43586058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 451 - 509
Target Start/End: Original strand, 2438690 - 2438748
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||||| |||||| ||||||||||||||| |||||||||||||||||||||| ||||||    
T  2438690 gtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaatt 2438748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 452 - 509
Target Start/End: Original strand, 30404822 - 30404879
Alignment:
Q  452 tgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    ||||| |||||| ||||||||||||||| ||| |||||||||||||||||| ||||||    
T  30404822 tgtcctggtgtcggacatgtgtcgtgtccgacgccgacacttgtaattacactgaatt 30404879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 451 - 511
Target Start/End: Complemental strand, 15972961 - 15972901
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaattgt 511  Q
    |||||| || ||| |||| |||||||||| |||||||||||||||||||||| ||||||||    
T  15972961 gtgtcccggcgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaattgt 15972901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 460 - 529
Target Start/End: Complemental strand, 24067829 - 24067758
Alignment:
Q  460 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaatttta 529  Q
    |||| |||| |||||||||||||||||||||||||| ||| |||| |||  || ||||||||||||||||||    
T  24067829 tgtctgacacgtgtcgtgtctgacaccgacacttgtgatttcatttaattatgacattttctcaaaatttta 24067758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 475 - 532
Target Start/End: Original strand, 37491850 - 37491909
Alignment:
Q  475 gtgtctgacaccgacacttgtaattacattgaatt--gtcattttctcaaaattttatca 532  Q
    ||||||||||||||||| | |||||||||||||||  || ||||||||||||||||||||    
T  37491850 gtgtctgacaccgacacatttaattacattgaattaagttattttctcaaaattttatca 37491909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 509
Target Start/End: Complemental strand, 5040802 - 5040764
Alignment:
Q  471 tgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  5040802 tgtcgtgtccgacaccgacacttgtaattacattgaatt 5040764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 502
Target Start/End: Complemental strand, 28596560 - 28596506
Alignment:
Q  448 ggagtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 502  Q
    |||||||||| ||||| |||| |||||||||| ||||||||||||| ||||||||    
T  28596560 ggagtgtccgagtgtcggacacgtgtcgtgtccgacaccgacacttataattaca 28596506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 481 - 531
Target Start/End: Complemental strand, 33884109 - 33884057
Alignment:
Q  481 gacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 531  Q
    |||||||||||||||||||||| |||||  ||||||||||||| |||||||||    
T  33884109 gacaccgacacttgtaattacactgaatcatgtcattttctcacaattttatc 33884057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 451 - 507
Target Start/End: Complemental strand, 21091811 - 21091755
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaa 507  Q
    |||||| ||||||||||| ||| | |||||||||| |||||||||||||||| ||||    
T  21091811 gtgtcccggtgtccgacaggtggcttgtctgacactgacacttgtaattacactgaa 21091755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 509
Target Start/End: Complemental strand, 37559058 - 37559007
Alignment:
Q  458 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||||| |||| |||||  ||| |||||||||||||||||||||||||||||    
T  37559058 ggtgtcggacacgtgtcaagtccgacaccgacacttgtaattacattgaatt 37559007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 459 - 505
Target Start/End: Complemental strand, 12224303 - 12224257
Alignment:
Q  459 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattg 505  Q
    ||||| |||| || ||||||| |||||||||||||||||||||||||    
T  12224303 gtgtcggacacgtatcgtgtccgacaccgacacttgtaattacattg 12224257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 487 - 530
Target Start/End: Original strand, 37211892 - 37211937
Alignment:
Q  487 gacacttgtaattacattgaat--tgtcattttctcaaaattttat 530  Q
    ||||||||||||||||||||||  |||||||||||| |||||||||    
T  37211892 gacacttgtaattacattgaattgtgtcattttctcgaaattttat 37211937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 531
Target Start/End: Original strand, 13501084 - 13501131
Alignment:
Q  486 cgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 531  Q
    |||||||||| ||||||||||||  ||||||||||| |||||||||||    
T  13501084 cgacacttgtgattacattgaattatgtcattttcttaaaattttatc 13501131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 451 - 509
Target Start/End: Complemental strand, 31557084 - 31557026
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||||| |||||| |||||||||||||||||||||||| ||||||||||||| ||||||    
T  31557084 gtgtcctggtgtcggacatgtgtcgtgtctgacaccgaaacttgtaattacactgaatt 31557026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 460 - 525
Target Start/End: Complemental strand, 42874601 - 42874534
Alignment:
Q  460 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaat 525  Q
    |||||||||||||| |||||  |||| ||||||||| ||||||||||||  |||||||||||||||||    
T  42874601 tgtccgacatgtgttgtgtccaacactgacacttgtgattacattgaattatgtcattttctcaaaat 42874534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 29705884 - 29705943
Alignment:
Q  209 aattataaccgtcaaattattataaacgtttgaattctatcattaccacttctgaagtca 268  Q
    |||||||||||| |||| ||||||||||||||| || |||||| ||||||||| ||||||    
T  29705884 aattataaccgttaaatcattataaacgtttgacttttatcataaccacttctaaagtca 29705943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 451 - 511
Target Start/End: Original strand, 44462166 - 44462226
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaattgt 511  Q
    |||||| |||||| ||||||| ||||||||||||||||||| | | |||| ||||||||||    
T  44462166 gtgtcccggtgtcggacatgtatcgtgtctgacaccgacacatatgattaaattgaattgt 44462226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 451 - 511
Target Start/End: Original strand, 44469699 - 44469759
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaattgt 511  Q
    |||||| |||||| ||||||| ||||||||||||||||||| | | |||| ||||||||||    
T  44469699 gtgtcccggtgtcggacatgtatcgtgtctgacaccgacacatatgattaaattgaattgt 44469759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 502
Target Start/End: Complemental strand, 5813680 - 5813629
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 502  Q
    |||||| |||||| |||| |||||||||| |||||||||||||||| |||||    
T  5813680 gtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtatttaca 5813629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 502
Target Start/End: Original strand, 33405355 - 33405406
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 502  Q
    |||||| |||||| ||||||||||||||| ||||||||||| | ||||||||    
T  33405355 gtgtccaggtgtcagacatgtgtcgtgtccgacaccgacacatataattaca 33405406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 459 - 509
Target Start/End: Complemental strand, 18407799 - 18407749
Alignment:
Q  459 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    ||||| ||||||||||||||| | || ||||||||||||||||| ||||||    
T  18407799 gtgtcggacatgtgtcgtgtccggcagcgacacttgtaattacactgaatt 18407749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 480 - 531
Target Start/End: Complemental strand, 27733906 - 27733853
Alignment:
Q  480 tgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 531  Q
    ||||||| |||||||| ||||||||||||  | |||||||||||||||||||||    
T  27733906 tgacaccaacacttgtgattacattgaattatatcattttctcaaaattttatc 27733853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 509
Target Start/End: Original strand, 36450725 - 36450783
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||||| |||||| |||| | |||||||| |||||| ||||||||||||||| ||||||    
T  36450725 gtgtcctggtgtcggacacgcgtcgtgtccgacacctacacttgtaattacactgaatt 36450783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 531
Target Start/End: Original strand, 24295138 - 24295190
Alignment:
Q  481 gacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 531  Q
    ||||||||||||||| |||||||| |||  ||||||||||||| |||||||||    
T  24295138 gacaccgacacttgtgattacattaaattgtgtcattttctcacaattttatc 24295190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 531
Target Start/End: Original strand, 25104613 - 25104646
Alignment:
Q  498 ttacattgaattgtcattttctcaaaattttatc 531  Q
    |||||||||||||||||||| |||||||||||||    
T  25104613 ttacattgaattgtcattttgtcaaaattttatc 25104646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 523
Target Start/End: Complemental strand, 40332265 - 40332205
Alignment:
Q  465 gacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 523  Q
    |||| ||||||||||  ||||||||||||||||||||| |||||  ||| |||||||||||    
T  40332265 gacacgtgtcgtgtcccacaccgacacttgtaattacactgaattatgtgattttctcaaa 40332205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 473 - 509
Target Start/End: Complemental strand, 4948718 - 4948682
Alignment:
Q  473 tcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  4948718 tcgtgtccgacaccgacacttgtaattacactgaatt 4948682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 507
Target Start/End: Original strand, 20679366 - 20679422
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaa 507  Q
    |||||| |||||| |||| |||| | ||||||||||||||||| |||||||| ||||    
T  20679366 gtgtcccggtgtcggacacgtgttgcgtctgacaccgacacttataattacactgaa 20679422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 531
Target Start/End: Original strand, 26915246 - 26915293
Alignment:
Q  486 cgacacttgtaattacattgaatt--gtcattttctcaaaattttatc 531  Q
    |||||||||| |||||||| ||||  ||||||||||||||||||||||    
T  26915246 cgacacttgtgattacattaaattatgtcattttctcaaaattttatc 26915293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 527
Target Start/End: Complemental strand, 31119140 - 31119097
Alignment:
Q  486 cgacacttgtaattacattgaat--tgtcattttctcaaaattt 527  Q
    |||||||||| ||||||||||||  |||||||||||||||||||    
T  31119140 cgacacttgtgattacattgaattatgtcattttctcaaaattt 31119097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 451 - 509
Target Start/End: Complemental strand, 1815345 - 1815287
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||||| |||||| ||||||||||||||| |||||||||||||||||||||| ||||||    
T  1815345 gtgtcccggtgtcggacatgtgtcgtgtcggacaccgacacttgtaattacactgaatt 1815287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 451 - 509
Target Start/End: Original strand, 40258904 - 40258962
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||||| |||||| |||| ||||||||||||||||||||||||||||||||| ||||||    
T  40258904 gtgtcctggtgtcggacaggtgtcgtgtctgacaccgacacttgtaattacactgaatt 40258962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 466 - 509
Target Start/End: Original strand, 38078647 - 38078690
Alignment:
Q  466 acatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  38078647 acatgtgtcgtgtccgacaccgacacttgtaattacattgaatt 38078690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 509
Target Start/End: Original strand, 18190079 - 18190137
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||||| |||||| |||| |||| |||||||||| ||||||||||||||||| ||||||    
T  18190079 gtgtcccggtgtcggacacgtgttgtgtctgacatcgacacttgtaattacactgaatt 18190137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 502
Target Start/End: Original strand, 22515865 - 22515909
Alignment:
Q  458 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 502  Q
    |||||| || |||||||||||| ||||||||||||||||||||||    
T  22515865 ggtgtcggatatgtgtcgtgtccgacaccgacacttgtaattaca 22515909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 502
Target Start/End: Original strand, 46348361 - 46348405
Alignment:
Q  458 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 502  Q
    |||||| |||| |||||||||| ||||||||||||||||||||||    
T  46348361 ggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 46348405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 509
Target Start/End: Complemental strand, 51410094 - 51410055
Alignment:
Q  470 gtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  51410094 gtgtcgtgtccgacaccgacacttgtaattacactgaatt 51410055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 459 - 509
Target Start/End: Complemental strand, 18337409 - 18337359
Alignment:
Q  459 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    ||||| |||| |||| ||||| |||||||||||||||||||||| ||||||    
T  18337409 gtgtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaatt 18337359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 500
Target Start/End: Complemental strand, 21530769 - 21530728
Alignment:
Q  459 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaatta 500  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||    
T  21530769 gtgtcggacatgtgtcgtgtccgacaccgacacttataatta 21530728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 509
Target Start/End: Complemental strand, 37598910 - 37598861
Alignment:
Q  460 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||| |||| |||||||||| ||||||||||||| |||||||| ||||||    
T  37598910 tgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaatt 37598861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 470 - 502
Target Start/End: Original strand, 22881606 - 22881638
Alignment:
Q  470 gtgtcgtgtctgacaccgacacttgtaattaca 502  Q
    |||||||||| ||||||||||||||||||||||    
T  22881606 gtgtcgtgtccgacaccgacacttgtaattaca 22881638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 327 - 387
Target Start/End: Complemental strand, 33152756 - 33152696
Alignment:
Q  327 ggctctgttagataaatatagtggatagttgataagctaccttatagtttatagcggatag 387  Q
    |||||| || |||||| |||| |||||| |||||||||| || |||||||||||| |||||    
T  33152756 ggctctatttgataaaaatagcggatagctgataagctagctgatagtttatagctgatag 33152696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 451 - 502
Target Start/End: Original strand, 32978870 - 32978921
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 502  Q
    |||||| |||||| ||||||||||||||| ||||||||||||||||||||||    
T  32978870 gtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattaca 32978921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 476 - 531
Target Start/End: Original strand, 6751878 - 6751935
Alignment:
Q  476 tgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 531  Q
    |||| ||||||||||||||| ||||||||||||  |||||||||||||||||||||||    
T  6751878 tgtccgacaccgacacttgtgattacattgaattatgtcattttctcaaaattttatc 6751935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 451 - 509
Target Start/End: Complemental strand, 34595222 - 34595164
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||||| |||||| |||| |||||||||| |||||||||||||||||||||| ||||||    
T  34595222 gtgtcccggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaatt 34595164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 481 - 531
Target Start/End: Complemental strand, 19369875 - 19369823
Alignment:
Q  481 gacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 531  Q
    ||||||||||||||| ||||||||||||  |||||||||||||||||||||||    
T  19369875 gacaccgacacttgtgattacattgaattatgtcattttctcaaaattttatc 19369823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 452 - 509
Target Start/End: Complemental strand, 28152185 - 28152128
Alignment:
Q  452 tgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    ||||| |||||| |||| |||||||||| |||||||||||||||||||||| ||||||    
T  28152185 tgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaatt 28152128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 451 - 523
Target Start/End: Complemental strand, 28715383 - 28715309
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 523  Q
    |||||| ||||||  ||| |||||||||| |||||||||||||||||||||| |||||  ||||||||| |||||    
T  28715383 gtgtcccggtgtcgaacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtcattttttcaaa 28715309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 451 - 531
Target Start/End: Original strand, 32225361 - 32225443
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 531  Q
    |||||| ||||||||||| | |||||||| ||||||||||| ||| |||||||||| |   || |||||||||||||||||||    
T  32225361 gtgtccaggtgtccgacaggggtcgtgtccgacaccgacacctgtgattacattgactcacgttattttctcaaaattttatc 32225443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 519
Target Start/End: Complemental strand, 30851674 - 30851620
Alignment:
Q  465 gacatgtgtcgtgtctgacaccgacacttgtaattacattgaattgtcattttct 519  Q
    |||| |||||||||| ||||||||||| | ||||||||||||||||| |||||||    
T  30851674 gacacgtgtcgtgtccgacaccgacacatataattacattgaattgtgattttct 30851620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 500
Target Start/End: Complemental strand, 4878023 - 4877982
Alignment:
Q  459 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaatta 500  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  4878023 gtgtcggacatgtgtcgtgtccgacaccgacacttgtaatta 4877982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 458 - 533
Target Start/End: Original strand, 26402658 - 26402737
Alignment:
Q  458 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtca--ttttctcaaaattttatcat 533  Q
    ||||||| |||||| ||||||| ||||||||||||||| |||||| |||||  |||||  |||| |||||||||||||||    
T  26402658 ggtgtccaacatgtatcgtgtccgacaccgacacttgtgattacactgaattatgtcattttttttcaaaattttatcat 26402737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 451 - 507
Target Start/End: Complemental strand, 16833396 - 16833340
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaa 507  Q
    |||||| |||||| |||  ||||||||||| ||||||||||||||||||||| ||||    
T  16833396 gtgtcctggtgtcggacgcgtgtcgtgtctaacaccgacacttgtaattacactgaa 16833340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 497
Target Start/End: Complemental strand, 24645562 - 24645523
Alignment:
Q  458 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaa 497  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  24645562 ggtgtcggacacgtgtcgtgtctgacaccgacacttgtaa 24645523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 488 - 531
Target Start/End: Complemental strand, 10031621 - 10031576
Alignment:
Q  488 acacttgtaattacattgaatt--gtcattttctcaaaattttatc 531  Q
    |||||||| |||||||||||||  ||||||||||||||||||||||    
T  10031621 acacttgtgattacattgaattatgtcattttctcaaaattttatc 10031576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 481 - 511
Target Start/End: Original strand, 15489733 - 15489763
Alignment:
Q  481 gacaccgacacttgtaattacattgaattgt 511  Q
    |||||||||||||||||||||||||||||||    
T  15489733 gacaccgacacttgtaattacattgaattgt 15489763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 481 - 536
Target Start/End: Complemental strand, 22746015 - 22745958
Alignment:
Q  481 gacaccgacacttgtaattacattgaattgt--cattttctcaaaattttatcatgtc 536  Q
    ||||||||||||||| ||||||||||| | |  |||||||||||||||||||| ||||    
T  22746015 gacaccgacacttgtgattacattgaaatataacattttctcaaaattttatcgtgtc 22745958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 327 - 389
Target Start/End: Complemental strand, 28077277 - 28077215
Alignment:
Q  327 ggctctgttagataaatatagtggatagttgataagctaccttatagtttatagcggatagct 389  Q
    ||||||||| | |||| |||| |||||||| ||||||||||| |||| ||||||| |||||||    
T  28077277 ggctctgtttggtaaaaatagcggatagtttataagctacctgatagcttatagctgatagct 28077215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 529
Target Start/End: Complemental strand, 7378047 - 7377987
Alignment:
Q  471 tgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaatttta 529  Q
    ||||||||| ||||||||||| | ||||||||||||||  ||| ||||||||||| |||||    
T  7378047 tgtcgtgtccgacaccgacacatataattacattgaattatgtgattttctcaaattttta 7377987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 509
Target Start/End: Original strand, 7977810 - 7977859
Alignment:
Q  460 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||| ||||| ||| ||||| |||||||||||||||||||||| ||||||    
T  7977810 tgtcggacatatgttgtgtccgacaccgacacttgtaattacactgaatt 7977859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 509
Target Start/End: Original strand, 27904016 - 27904065
Alignment:
Q  460 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||| ||| ||| |||||||||||||||||| ||||||||||| ||||||    
T  27904016 tgtcagacttgtctcgtgtctgacaccgacatttgtaattacactgaatt 27904065  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 459 - 491
Target Start/End: Complemental strand, 18367927 - 18367895
Alignment:
Q  459 gtgtccgacatgtgtcgtgtctgacaccgacac 491  Q
    ||||| |||||||||||||||||||||||||||    
T  18367927 gtgtcagacatgtgtcgtgtctgacaccgacac 18367895  T

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Target: scaffold0083 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 458 - 509
Target Start/End: Original strand, 45508 - 45559
Alignment:
Q  458 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||||| |||| |||||||||| |||||||||||||||||||||| ||||||    
T  45508 ggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaatt 45559  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 451 - 502
Target Start/End: Complemental strand, 42893448 - 42893397
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 502  Q
    |||||| |||||| |||| |||| ||||||||||||||||||||||||||||    
T  42893448 gtgtcctggtgtcggacacgtgttgtgtctgacaccgacacttgtaattaca 42893397  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 486 - 531
Target Start/End: Complemental strand, 15302576 - 15302531
Alignment:
Q  486 cgacacttgtaattacattgaattgtcattttctcaaaattttatc 531  Q
    |||||||||| ||||| ||||||||||||||| |||||||||||||    
T  15302576 cgacacttgtgattaccttgaattgtcattttttcaaaattttatc 15302531  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 482 - 532
Target Start/End: Original strand, 30080503 - 30080555
Alignment:
Q  482 acaccgacacttgtaattacattgaatt--gtcattttctcaaaattttatca 532  Q
    ||||||| |||||| |||||||||||||  |||||||||||||||||||||||    
T  30080503 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttatca 30080555  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 475 - 511
Target Start/End: Original strand, 19167571 - 19167607
Alignment:
Q  475 gtgtctgacaccgacacttgtaattacattgaattgt 511  Q
    ||||||||||||||||||||| |||||||||||||||    
T  19167571 gtgtctgacaccgacacttgtgattacattgaattgt 19167607  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 509
Target Start/End: Complemental strand, 15884057 - 15884018
Alignment:
Q  470 gtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  15884057 gtgtcgtgtccgacaccgacacttgtaattacactgaatt 15884018  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 523
Target Start/End: Complemental strand, 27932323 - 27932249
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 523  Q
    |||||| ||||||||||| |||||||||| |||||| | | ||||||||||| |||||  ||| |||||||||||    
T  27932323 gtgtcctggtgtccgacacgtgtcgtgtccgacaccaagatttgtaattacactgaattatgtaattttctcaaa 27932249  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 523
Target Start/End: Original strand, 28588645 - 28588719
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 523  Q
    |||||| |||||| || |||||||||||| ||||||||||| | |||||||| |||||  ||| |||||||||||    
T  28588645 gtgtcctggtgtcagatatgtgtcgtgtccgacaccgacacctataattacactgaattatgtgattttctcaaa 28588719  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 523
Target Start/End: Original strand, 30502367 - 30502433
Alignment:
Q  459 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt--gtcattttctcaaa 523  Q
    ||||| ||||||||||||||| ||||||||||| | |||||||| ||||||  || |||||||||||    
T  30502367 gtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaa 30502433  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 523
Target Start/End: Original strand, 30542710 - 30542776
Alignment:
Q  459 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt--gtcattttctcaaa 523  Q
    ||||| ||||||||||||||| ||||||||||| | |||||||| ||||||  || |||||||||||    
T  30542710 gtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaa 30542776  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 509
Target Start/End: Original strand, 21191027 - 21191085
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||||| || ||| |||| |||| ||||| |||||||||||||||||||||| ||||||    
T  21191027 gtgtcccggagtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaatt 21191085  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 459 - 509
Target Start/End: Original strand, 21576724 - 21576774
Alignment:
Q  459 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    ||||| |||| |||||||||| |||| ||||||||||||||||| ||||||    
T  21576724 gtgtcagacacgtgtcgtgtccgacatcgacacttgtaattacactgaatt 21576774  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 339 - 389
Target Start/End: Original strand, 22976404 - 22976454
Alignment:
Q  339 taaatatagtggatagttgataagctaccttatagtttatagcggatagct 389  Q
    |||| |||| |||||| |||||||||| ||||||||||||||| |||||||    
T  22976404 taaaaatagcggatagctgataagctagcttatagtttatagctgatagct 22976454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 339 - 385
Target Start/End: Complemental strand, 33695405 - 33695359
Alignment:
Q  339 taaatatagtggatagttgataagctaccttatagtttatagcggat 385  Q
    |||| |||| ||||||||||||||||| || ||||||||||||||||    
T  33695405 taaaaatagcggatagttgataagctagctgatagtttatagcggat 33695359  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 509
Target Start/End: Original strand, 23012380 - 23012437
Alignment:
Q  452 tgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    ||||| |||||| |||||||||||||||  |||||||||| | |||||||||| ||||    
T  23012380 tgtcccggtgtcagacatgtgtcgtgtccaacaccgacacatataattacattaaatt 23012437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 481 - 509
Target Start/End: Complemental strand, 8420085 - 8420057
Alignment:
Q  481 gacaccgacacttgtaattacattgaatt 509  Q
    |||||||||||||||||||||||||||||    
T  8420085 gacaccgacacttgtaattacattgaatt 8420057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 475 - 528
Target Start/End: Original strand, 16207586 - 16207641
Alignment:
Q  475 gtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaatttt 528  Q
    |||||||||||| |||||||| ||||||||||||  ||||| |||||| |||||||    
T  16207586 gtgtctgacaccaacacttgtgattacattgaattatgtcaatttctctaaatttt 16207641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 465 - 509
Target Start/End: Complemental strand, 42029826 - 42029782
Alignment:
Q  465 gacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    ||||||||||||||| |||||||| || | |||||||||||||||    
T  42029826 gacatgtgtcgtgtccgacaccgatacatataattacattgaatt 42029782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 509
Target Start/End: Original strand, 433 - 491
Alignment:
Q  451 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    |||||| |||||| |||| | |||||||| |||||||||||||||||||||| ||||||    
T  433 gtgtcccggtgtcggacacgcgtcgtgtccgacaccgacacttgtaattacactgaatt 491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 480 - 531
Target Start/End: Complemental strand, 9007 - 8954
Alignment:
Q  480 tgacaccgacacttgtaattacattgaatt--gtcattttctcaaaattttatc 531  Q
    |||||||||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  9007 tgacaccgacacttgtgattacgttgaattatgtcattttctcaaaattttatc 8954  T

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Target: scaffold0050 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 452 - 509
Target Start/End: Complemental strand, 70365 - 70308
Alignment:
Q  452 tgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 509  Q
    ||||| |||||| |||| |||||||||| ||||||||||||| |||||||| ||||||    
T  70365 tgtcctggtgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaatt 70308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 502
Target Start/End: Complemental strand, 8879 - 8835
Alignment:
Q  458 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 502  Q
    |||||| |||| |||||||||| ||||||||||||||||||||||    
T  8879 ggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 8835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 460 - 502
Target Start/End: Original strand, 5016 - 5058
Alignment:
Q  460 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 502  Q
    |||| |||| |||||||||| ||||||||||||||||||||||    
T  5016 tgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 5058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 500
Target Start/End: Complemental strand, 1724 - 1683
Alignment:
Q  459 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaatta 500  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||    
T  1724 gtgtcggacatgtgtcgtgtccgacaccgacacttataatta 1683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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