View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20240_high_11 (Length: 360)
Name: NF20240_high_11
Description: NF20240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20240_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 12327106 - 12326808
Alignment:
| Q |
1 |
atatatatagcttgatcttcatcttcgatctctaatttgactgactacttattttattttctagagttaaacaatgaatggactgagggaaaggtatccc |
100 |
Q |
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| T |
12327106 |
atatatatagcttgatcttcatcttcgatctctaatttgact----acttattttattttctagagt-aagcaatgaatggactgagggaacggtatccc |
12327012 |
T |
|
| Q |
101 |
actgaagcaatgtcaaataagtttattattatgaatgaaactagtttcgctaatttctctacggcatataaggtggcggttgtttcagaaaataacaaga |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12327011 |
actgaagcaatgtcaaatatgtttattattatgaatgaaactagtgtcgctaatttcactacggcatataaggtggcggttgtttcagaaaataacaagg |
12326912 |
T |
|
| Q |
201 |
agttatgcatttgtatttgtgctatgataacttatgtatctgctgaattccagaaccctgcgttaacagcattgggtgcaataggtataaaacctaatgc |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12326911 |
agttatgcatttgtgtttgtgctatgataacttatgtatctgctgaattccagaaccctgcgttaacagcattgggtgcaataggtataaaacctaatgc |
12326812 |
T |
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