View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20240_high_12 (Length: 345)
Name: NF20240_high_12
Description: NF20240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20240_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 6697051 - 6697377
Alignment:
| Q |
1 |
aagtactacatattaactggtttggtgtgtatgggatccaatgttggtttcccccaccaacttagtaagttatcttcgtaccacattcaagcaaagggaa |
100 |
Q |
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| T |
6697051 |
aagtactacatattaactggtttggtgtgtatgggatccgatgttggtttcccccaccaacttagtaagttatcttcgtaccacatccaagcaaagggaa |
6697150 |
T |
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| Q |
101 |
aacaatgattagcataaacaccttcctagtacatgactctgatttttgtgttacaatgatagtttaactagaaagtagaaactcttggcacaaacaaagt |
200 |
Q |
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| T |
6697151 |
aacaatgattagcataaacaccttcctagtacatgactctgatttttgtgttacaatgatagtttaactagaaagtagaaactcttggcacaaacaaagt |
6697250 |
T |
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| Q |
201 |
actgaatggtctcgtat--tatataagcagttcaattttttggtacacaaattagtaaatataaaaaacatcatgtatctctataaattaccgtttattt |
298 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6697251 |
actgaatggtctcgtattatatataagcagttcaattttttggtacacaaattagtaaatataaaaaacatcatgtatctctataaattatcgtttattt |
6697350 |
T |
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| Q |
299 |
tgttatttgtaagaattgaagatgata |
325 |
Q |
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||||||||||||||||||||||||||| |
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| T |
6697351 |
tgttatttgtaagaattgaagatgata |
6697377 |
T |
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