View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20240_high_21 (Length: 238)
Name: NF20240_high_21
Description: NF20240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20240_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 41486310 - 41486467
Alignment:
| Q |
1 |
catattagtcaccaaaaggttctcctattgcacatttgcttataagttataactgatcaaacgagaacgcacaagtcatcagacatggtcacataagaga |
100 |
Q |
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| T |
41486310 |
catattagtcaccaaaaggttctcctattgcacatttgcttataagttataactgatcaaacgagaacgcacaagtcatcagacatggtcacataagaga |
41486409 |
T |
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| Q |
101 |
ttatgcatattattaagattgggtatggcatgctactctcccatttctaatattttta |
158 |
Q |
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| T |
41486410 |
ttatgcatattattaagattgggtatggcatgctactctcccatttctaatattttta |
41486467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 41483187 - 41483305
Alignment:
| Q |
20 |
ttctcctattgcacatttgcttataagttataactgatcaaacgagaacgcacaagtcatcagacatggtcacataagagattatgcatattattaagat |
119 |
Q |
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| T |
41483187 |
ttctcctattgcatgtttgcttataagttataactgatcaaatgcgaatgcacaagtcatcaggcatgttcacataagagattatgcatattattaagat |
41483286 |
T |
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| Q |
120 |
tgggtatggcatgctactc |
138 |
Q |
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| T |
41483287 |
tgggtatggcatgctactc |
41483305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 41486840 - 41486905
Alignment:
| Q |
156 |
ttagattctactttggtttagtagaattaccaacatatgagataagagtacatttgatatgtttac |
221 |
Q |
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| T |
41486840 |
ttagattctactttggtttagtagaattaccaacatatgagataagagtacatttgatatgtttac |
41486905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 49562198 - 49562275
Alignment:
| Q |
142 |
catttctaatatttttagattctactttggtttagtagaattaccaacatatgagataagagtacatttgatatgtttact |
222 |
Q |
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| T |
49562198 |
catttctaatatttttcgattctattttggtttattagaattgccaacatatgggaaaag---acatttgatatgtttact |
49562275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 5664449 - 5664411
Alignment:
| Q |
36 |
ttgcttataagttataactgatcaaacgagaacgcacaa |
74 |
Q |
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| T |
5664449 |
ttgcttataagttataactgatcaaacaagaatgcacaa |
5664411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 5685473 - 5685435
Alignment:
| Q |
36 |
ttgcttataagttataactgatcaaacgagaacgcacaa |
74 |
Q |
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| T |
5685473 |
ttgcttataagttataactgatcaaacaagaatgcacaa |
5685435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 45384579 - 45384520
Alignment:
| Q |
1 |
catattagtcaccaaaaggttctcctattgcacatttgcttataagttataactgatcaaac |
62 |
Q |
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| T |
45384579 |
catattagtcaccaaa-ggttatcctattgtac-tttggttattagttataactgatcaaac |
45384520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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