View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20240_high_3 (Length: 522)
Name: NF20240_high_3
Description: NF20240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20240_high_3 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 13 - 522
Target Start/End: Complemental strand, 38995318 - 38994809
Alignment:
| Q |
13 |
aatatagtagtatgcaaggcatatgtttagaggaagcaaatttgttatgtgtcaaagttaaaacgtaagagataaaagaaattaattatggaagactcat |
112 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38995318 |
aatatagtagtatgcaaggtatatgtttagaggaagcaaatttgttatgtgtcaaagttaaaacgtaagagataaaagaaattaattatgaaagactcat |
38995219 |
T |
|
| Q |
113 |
gttcattgaaaattagaggtgtaaatcaaatgcagaggtatgtcttatggcatgaaacaagtttaacaaagctgcaattgttataatagatctcatgcct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38995218 |
gttcattgaaaattagaggtgtaaatcaaatgcagaggtatgtcttatggcatgaaacaagtttaacaaagctgcaattgttataatagatctcatgcct |
38995119 |
T |
|
| Q |
213 |
tttagtgtgagattctttacaatatgtacatgtttcatacaacaaataacacaggtttgttcaaaaacaaataacacaggaaatttattggtatttggtt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38995118 |
tttagtgtgagattctttacaatatgtacatgtttcatacaacaaataacacaggtttgttcaaaaacaaataacacaggaaatttattggtatttggtt |
38995019 |
T |
|
| Q |
313 |
ttgtgatattgctgactgtattcattttctttactctttctttattctactatcagtttaggattctcctattctttgtaatgttgacattgacaatcaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38995018 |
ttgtgatattgctgactgtattcattttctttactctttctttattctactatcagtttaggattctcctattctttgtaatgttgacattgacaatcaa |
38994919 |
T |
|
| Q |
413 |
aatgtatgtgatgctttgaagggggaaagttgatttatcattcatatggtggtaaatcaactttaatatgttgctaggtaataattttgcacactgaatg |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38994918 |
aatgtatgtgatgctttgaagggggaaagttgatttatcattcatatggtggtaaatcaactttaatatgttgctaggtaataattttgcacactgaatg |
38994819 |
T |
|
| Q |
513 |
aatattgtgt |
522 |
Q |
| |
|
|||||||||| |
|
|
| T |
38994818 |
aatattgtgt |
38994809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University