View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20240_high_5 (Length: 431)
Name: NF20240_high_5
Description: NF20240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20240_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 52850333 - 52849914
Alignment:
| Q |
1 |
tgagctctacatccaagtacacagaatctgaaagttcacctttgatgagaaggaaaaaataggacctatgtacgagtggcacattgcatgcatcccaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52850333 |
tgagctctacatccaagtacacagaatctgaaagttcacctttgatgagaaggaaaaaataggacctatgtacgagtggcacattgcatgcatcccaaag |
52850234 |
T |
|
| Q |
101 |
ttcgactatatctctttgctgcatctcaaatttagagggtattaaagtcccccaaactccgggtaaactgagacctcttactctgttcacatttttgttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52850233 |
ttcgactatatctctttgctgcatctcaaatttagagggtattaaagtcccccaaactccgggtaaactgagacctcttactctgttcacatttttgttg |
52850134 |
T |
|
| Q |
201 |
attggaggtgttctcataggtacctatcatacaat-nnnnnnncacattggtgaaggcttcatgaaggaactcatgaacttaggcaagagcatagaactt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
52850133 |
attggaggtgttctcataggtacctatcatacaataaaacaaacacattggtgaaggcttcatgaaggaactcatgaacttaggtaagagcatagaactt |
52850034 |
T |
|
| Q |
300 |
ttaatctcgtgacatttagtttaagttataatcacaaaagatccaagggtgagttcttattagacaacaagtcctattttctaattaaatataagttata |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
52850033 |
ttaatctcgtgacatttagtttaagttataatcacaaaagatccaagggtgagttcttattagacaacaattcctattttctatttaaatataagttata |
52849934 |
T |
|
| Q |
400 |
tacaagagcaccagaataat |
419 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
52849933 |
tacaagagcaccagagtaat |
52849914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University