View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20240_low_1 (Length: 742)
Name: NF20240_low_1
Description: NF20240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20240_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 386 - 731
Target Start/End: Complemental strand, 5294927 - 5294578
Alignment:
| Q |
386 |
ggaggatactttaaagtctcaaaccaacacgtcctt--tcttgcgttattaatattgcaccgtatgattattatcattttacaaatatgttttttactaa |
483 |
Q |
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| T |
5294927 |
ggagaatactctaaagtctcaaaccaacacgtccttcttcttgcattattaatattgcaccgtatgattattatcattttacaaatatgttttttactaa |
5294828 |
T |
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| Q |
484 |
agttttgttttgatcgtagcttattgtgggtatattt--atattggatagatgaatgaatgtattgcacatgactctgtcgtgtttctctcaagtgtctt |
581 |
Q |
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| T |
5294827 |
agttttgttttgatcatagcttattgtgggtatatttttatattggatagatgaatgaatgtattgcacatgactctgtcgtgtttctctcaagtgtctt |
5294728 |
T |
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| Q |
582 |
gtgatgtattggaagaatactagctactgggaagtaaagctctagctagcacattgttgctattcatttatcatgattcatcaattattggccacaaatc |
681 |
Q |
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| T |
5294727 |
gtgatgtattggaagaatactagctactaggaagtaaagctctagctagcacattgttgctattcatttatcatgattcatcaattattggccacaaatc |
5294628 |
T |
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| Q |
682 |
tatgttttgtctgattgtaatccatatcatttttattggttcttgttcat |
731 |
Q |
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| T |
5294627 |
tatgttttgtctgattgtaatccatatcatttttattggttcttgttcat |
5294578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 20 - 343
Target Start/End: Complemental strand, 5295328 - 5295001
Alignment:
| Q |
20 |
gggggaatagcatcattcaactcagtttttcaagaaatcaaagagtttcattctctcccaattcatgagttcttcattgatgtttatgtgataaaacgtg |
119 |
Q |
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| T |
5295328 |
gggggaatatcatcattcaactcagtttttcaagaaatcaaagagtttcattctctcccaattcatgagttcttcattgatgtttatgtgataaaacgtg |
5295229 |
T |
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| Q |
120 |
agaattttgtttcactttttaataaa-ttattcagagaagaaaacaaagatgctgcaatattcgtgaaaca-gatggaacagtggagaggcaaatctttg |
217 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5295228 |
agaattttgtttcactttttaataaatttattcagagaagaaaacaaagatgctgcaatattcgtgaaacacgatggaacagtggagaggcaaatctttg |
5295129 |
T |
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| Q |
218 |
tttgtctaactattttggttttgtctgaccagttgtgagattccg--tatgtctttttcacatttgagtcagatttacttggcttcattgtcatgcatgc |
315 |
Q |
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| T |
5295128 |
tttgtctaactattttggttttgtctgaccagttgtgagattccgtatatgtctttttcacatttgagtcagatttacttggcttcattgtcatgcatgc |
5295029 |
T |
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| Q |
316 |
atattgtatccacacaatccttcttgca |
343 |
Q |
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| T |
5295028 |
atattgtatccacacaatccttcttgca |
5295001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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