View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20240_low_10 (Length: 366)
Name: NF20240_low_10
Description: NF20240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20240_low_10 |
 | |
|
| [»] scaffold0850 (1 HSPs) |
| | |
|
| [»] scaffold1868 (1 HSPs) |
| | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
| [»] scaffold0078 (1 HSPs) |
| | |
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| [»] scaffold0097 (1 HSPs) |
| | |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 70 - 274
Target Start/End: Complemental strand, 181439 - 181235
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
181439 |
aggagtttccttctatatctcgtcggttgtgcgttgttcactaacaaaatgaacagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
181340 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagtac |
269 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
181339 |
cgattgggaagtggtcatggggagggattgccttagcttacctgtacgactatctggatgattctgttattatgaataacagaacgatggttgggagtac |
181240 |
T |
|
| Q |
270 |
cactc |
274 |
Q |
| |
|
||||| |
|
|
| T |
181239 |
cactc |
181235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 70 - 258
Target Start/End: Original strand, 48163810 - 48163998
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
48163810 |
aggagttttcttctatatctcgttggttgtgcgttgttcactaacaaaacgaacagacacatcgacttgatatatcttgattgtatggcggacttgcagg |
48163909 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatg |
258 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48163910 |
cgattgggaagtggtcatggggagggatggccttagcgtacctgtacgactatctggatgattatgttattctgaataacagaacgatg |
48163998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 70 - 274
Target Start/End: Original strand, 45033672 - 45033876
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
45033672 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaacagacacatcgacttggtatattttgattgtatggcggacttgcaga |
45033771 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagtac |
269 |
Q |
| |
|
|||||| |||||||| || ||||||||| ||||||| |||||||||| |||| ||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45033772 |
cgattgggaagtggttatagggagggatgaccttagcgtacctgtacgactatctggatgattctgttattctgaataacagaacgatggctaggagtac |
45033871 |
T |
|
| Q |
270 |
cactc |
274 |
Q |
| |
|
|||| |
|
|
| T |
45033872 |
gactc |
45033876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 70 - 274
Target Start/End: Complemental strand, 18943869 - 18943665
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18943869 |
aggagtttgcttctatatctcgtcgattgtgtgttgttcacttacaaaacgaacagacacatcgacttgatatatcttgattgtatggcggacttgcagg |
18943770 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagtac |
269 |
Q |
| |
|
|||||| || |||||||||||||||||| |||||||| |||||||||| |||| ||||||||| ||||||||||||||||| |||||||| | ||||||| |
|
|
| T |
18943769 |
cgattgggatgtggtcatggggagggatggccttagcgtacctgtacgactatctggatgattctgttattctgaataacaaaacgatggctgggagtac |
18943670 |
T |
|
| Q |
270 |
cactc |
274 |
Q |
| |
|
|||| |
|
|
| T |
18943669 |
gactc |
18943665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 70 - 269
Target Start/End: Original strand, 38110134 - 38110333
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38110134 |
aggagtttccttctatatttcgtcggttgtgcgctgttcactaacaaaatgaacagacacatcaacttgatatatcttgattgtatgacggacttgtagg |
38110233 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagtac |
269 |
Q |
| |
|
|||||| |||||||||||| |||||||| |||||||||||||||||| |||| ||||||||||||||||| |||||||||||| ||||||| ||||||| |
|
|
| T |
38110234 |
cgattgggaagtggtcatgtggagggatgaccttagcttacctgtacgactatctggatgattatgttattatgaataacagaaagatggttgggagtac |
38110333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 70 - 274
Target Start/End: Original strand, 18907212 - 18907416
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18907212 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaacatacacatcgacttgatatatcttgattgtatggcggacttgcagg |
18907311 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagtac |
269 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||| ||| |||||| |||| ||||| ||| |||||||||||||| |||| ||||| | ||||||| |
|
|
| T |
18907312 |
cgattcggaagtggtcatggggagggattgacttagcgtacatgtacgactatctggattattctgttattctgaatagcagagtgatggctcggagtac |
18907411 |
T |
|
| Q |
270 |
cactc |
274 |
Q |
| |
|
|||| |
|
|
| T |
18907412 |
gactc |
18907416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 72 - 259
Target Start/End: Complemental strand, 47868090 - 47867903
Alignment:
| Q |
72 |
gagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcaggcg |
171 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||| | ||||||| ||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
47868090 |
gagttttcttctatatctcgtcggtagtgcgctgttcactaacaaaacgaacaaacacatcaacttgatatatcttgattgtatggcggacttgcaggtg |
47867991 |
T |
|
| Q |
172 |
attgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatgg |
259 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| | ||||||||||||| |||| |
|
|
| T |
47867990 |
attgtgaagtggtcatggggagggatgaccttagcttacctgtacgattatctggatgattatgttcgtttgaataacagaacaatgg |
47867903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 70 - 274
Target Start/End: Original strand, 8183 - 8387
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | |||||||||| |
|
|
| T |
8183 |
aggagtttccttctatatctcgtcggttgtgcgatgttcactaacaaaacgaacagacacatcgacttgatatatcttgattgcatggctgacttgcagg |
8282 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagtac |
269 |
Q |
| |
|
|||||| ||||| |||| |||||||||| | ||||||||||||||| ||| ||||||| | ||||||| |||||||||||||||||| | ||||||| |
|
|
| T |
8283 |
cgattgggaagttgtcaaggggagggatggttttagcttacctgtaccactacctggatgactctgttattttgaataacagaacgatggctgggagtac |
8382 |
T |
|
| Q |
270 |
cactc |
274 |
Q |
| |
|
||||| |
|
|
| T |
8383 |
cactc |
8387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 70 - 212
Target Start/End: Complemental strand, 13827491 - 13827349
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||||||| |||||||||| ||| ||||||||||||||||||||||||| ||||| || |||||| ||||||||||||||||||| |||||| | | |
|
|
| T |
13827491 |
aggagttttcttttatatctcgttggtagtgcgttgttcactaacaaaacgaacagacaaattgacttggtatatcttgattgtatgacagacttgaatg |
13827392 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacct |
212 |
Q |
| |
|
| ||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13827391 |
ctatttggaagtggtcatggggagggatgaccttagcttacct |
13827349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 70 - 274
Target Start/End: Complemental strand, 46527522 - 46527318
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
46527522 |
aggagttttcttctatatctcgtcggttgtgcgatgttcactaacaaaacgaacagacacatcgacttgatatatcttgattgtatggcagacttgcagg |
46527423 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagtac |
269 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| ||||||| || |||| ||||||||| |||||||||||||||||||||||||| | ||||||| |
|
|
| T |
46527422 |
cgattgggaagtggtcatggggagggatggccttagcgtacctgttcgactatgtggatgattctgttattctgaataacagaacgatggctgggagtac |
46527323 |
T |
|
| Q |
270 |
cactc |
274 |
Q |
| |
|
|||| |
|
|
| T |
46527322 |
aactc |
46527318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 70 - 274
Target Start/End: Original strand, 10553612 - 10553816
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | |||||||||| |
|
|
| T |
10553612 |
aggagtttccttctatatctcgttggttgtgcgttgttcactaacaaaacgaacagacacatcgacttgatttatcttgattgtatggctgacttgcagg |
10553711 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagtac |
269 |
Q |
| |
|
|||||| |||||||| |||||||||||| |||||||||||| |||||| |||| ||||||| | ||||||| ||||||||| |||||||||| ||||||| |
|
|
| T |
10553712 |
cgattgggaagtggtaatggggagggatggccttagcttacatgtacgactatctggatgactctgttattttgaataacataacgatggttgggagtac |
10553811 |
T |
|
| Q |
270 |
cactc |
274 |
Q |
| |
|
|||| |
|
|
| T |
10553812 |
gactc |
10553816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 89 - 274
Target Start/End: Original strand, 41963348 - 41963533
Alignment:
| Q |
89 |
tcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcaggcgattgtgaagtggtcatg |
188 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
41963348 |
tcgtcggttgtgcgttgttcacgaacaaaacgaacagacacatcgacttgatacatcttgattgtatggcggacttgcaggcgattgagaagtggtcatg |
41963447 |
T |
|
| Q |
189 |
gggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagtaccactc |
274 |
Q |
| |
|
||||||||| |||||||| |||||||||| |||| | ||||||| |||||||||||||||| ||||||||||| ||||||| |||| |
|
|
| T |
41963448 |
gggagggatggccttagcatacctgtacgactatctagatgattctgttattctgaataacggaacgatggttgggagtacgactc |
41963533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 70 - 237
Target Start/End: Complemental strand, 11407787 - 11407620
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||| ||||||||||||| ||| ||| ||||| |||||||||||||||||||||||||| ||||| | | |
|
|
| T |
11407787 |
aggagttttcttctttatctcgtcggtagtgcgttattcactaacaaaatgaacagagacatccacttgatatatcttgattgtatgacgcacttggatg |
11407688 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgtt |
237 |
Q |
| |
|
| |||| ||||||||||||||||||||| || |||||||||| || | ||||| |||||||||||| |
|
|
| T |
11407687 |
ctattgggaagtggtcatggggagggatgaccctagcttacctatatgattattttgatgattatgtt |
11407620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 70 - 197
Target Start/End: Complemental strand, 28508626 - 28508499
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||||| | |||||||||||||||||||| ||||||| | | |
|
|
| T |
28508626 |
aggagttttcttctatatctcatcggtagtgcgctgttcactaacaaaacgaacggacacatcaatgtgatatatcttgattgtatggtggacttgaatg |
28508527 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggat |
197 |
Q |
| |
|
|||||| |||||||||||||| |||||| |
|
|
| T |
28508526 |
cgattgggaagtggtcatgggtagggat |
28508499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 5e-78; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 70 - 257
Target Start/End: Original strand, 4173799 - 4173986
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
4173799 |
aggagttttcttctatatctcgtcggttgtgcgctgttcactaacaaaacgaatagacacatcgacatgatatatcttgattgtatggtggacttgcaga |
4173898 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgat |
257 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4173899 |
cgattgggaagtggtcatggggagggatggccttagcgtacctgtacgactatctggatgattatgttattctgaataacagaacgat |
4173986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 70 - 274
Target Start/End: Original strand, 26390643 - 26390846
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26390643 |
aggagtttccttctatatctcgtcggttgtgcgttgttcactaacaaaacgaacagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
26390742 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagtac |
269 |
Q |
| |
|
|||||| |||||||||| |||||||||| ||| |||||||| |||||| |||| | ||||||||||||||| ||| |||||||||||||| | ||||||| |
|
|
| T |
26390743 |
cgattgggaagtggtca-ggggagggatggccctagcttacatgtacgactatctagatgattatgttattttgagtaacagaacgatggctgggagtac |
26390841 |
T |
|
| Q |
270 |
cactc |
274 |
Q |
| |
|
||||| |
|
|
| T |
26390842 |
cactc |
26390846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 70 - 259
Target Start/End: Complemental strand, 31502242 - 31502054
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
31502242 |
aggagtttccttctatatctcgtcggttttgcgttgttcactaacaaaacgaacagatacatcgacttgatatatcttgattgcatggcggacttgcagg |
31502143 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatgg |
259 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||| |||| ||| |||||||||||||||| ||||||| ||| ||||||| |
|
|
| T |
31502142 |
cgattgagaagtggtcatggggagggatgaccttagcttacct-tacgattatctggatgattatgttatcctgaatagcagcacgatgg |
31502054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 70 - 261
Target Start/End: Original strand, 29901217 - 29901408
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29901217 |
aggagttttcttctatatctcgccggtagtgcgttgttcactaacaaaacgaacagacacatcgacttgatatatcttgattgtatggcggacttgcagg |
29901316 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggtt |
261 |
Q |
| |
|
| |||| |||||| ||| |||||||||| | ||| |||||||||||| ||| ||||||||| |||| | ||||||||| |||||||||| |
|
|
| T |
29901317 |
caattgggaagtgatcaaggggagggatgactttatcttacctgtacgattatctggatgattctgttcgtttgaataacataacgatggtt |
29901408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 70 - 232
Target Start/End: Complemental strand, 695847 - 695685
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
695847 |
aggagtttccttttatatctcgttggttgtgcgttgttcactaacaaaacgaacagacacatcaacttgatatatcttgattgtatggcggacttgcagg |
695748 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgatt |
232 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||| |||| ||| ||||||||| |
|
|
| T |
695747 |
cgattggaaagtggtcatggggagggatgaccttagcttacccctacgattatctggatgatt |
695685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 70 - 237
Target Start/End: Original strand, 20722561 - 20722728
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| || | | |
|
|
| T |
20722561 |
aggagttttcttttatatcttgtcggtagtgcgttgttcactaacaaaacgaacagacacatcgacttggtatatcttgattgtatggtggacctgaatg |
20722660 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgtt |
237 |
Q |
| |
|
| |||| |||||| |||||||||||||| ||||||||||||| || | ||| | |||||||||||| |
|
|
| T |
20722661 |
caattgggaagtgatcatggggagggatgaccttagcttacctatatgattatcttgatgattatgtt |
20722728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 268
Target Start/End: Complemental strand, 2120859 - 2120777
Alignment:
| Q |
186 |
atggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagta |
268 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| |||| ||||||| | || |||| |||||||||||||||||| | |||||| |
|
|
| T |
2120859 |
atggggagggatggccttagcgtacctgtacgactatctggatgactctgctattttgaataacagaacgatggctgggagta |
2120777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 21832518 - 21832584
Alignment:
| Q |
146 |
ttgattgtatgacggacttgcaggcgattgtgaagtggtcatggggagggattgccttagcttacct |
212 |
Q |
| |
|
||||||||||| ||||||| ||||||||| |||||||||||||| || ||| ||||||||||||| |
|
|
| T |
21832518 |
ttgattgtatggtggacttgtaggcgattgggaagtggtcatgggaagagatgaccttagcttacct |
21832584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 70 - 274
Target Start/End: Complemental strand, 9040015 - 9039811
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9040015 |
aggagttttcttttatatctcgtcggttgtgcgctgttcactaacaaaacgaacagacacatcgacttgatatatcttgattgtatggcggacttgcagg |
9039916 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagtac |
269 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| |||||||||| |||| | ||||||| ||||||||||||||| |||||||||| | ||||||| |
|
|
| T |
9039915 |
cgattgggaagtggtcatggggagggatggccttagcgtacctgtacgactatctagatgattctgttattctgaataatagaacgatggctgggagtac |
9039816 |
T |
|
| Q |
270 |
cactc |
274 |
Q |
| |
|
|||| |
|
|
| T |
9039815 |
aactc |
9039811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 72 - 269
Target Start/End: Original strand, 19875623 - 19875818
Alignment:
| Q |
72 |
gagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcaggcg |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19875623 |
gagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaacagacacatcgacttgatatatcttgattgtatg-gggacttgcaggca |
19875721 |
T |
|
| Q |
172 |
attgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagtac |
269 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| ||| |||||| |||| |||||| || |||||||||||||||||||||||||| | ||||||| |
|
|
| T |
19875722 |
attgggaagtggtcatggggagggatggccttagcgtacttgtacgactatctggatg-ttctgttattctgaataacagaacgatggctgggagtac |
19875818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 70 - 268
Target Start/End: Complemental strand, 37981384 - 37981186
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
37981384 |
aggagtttccttctatatctcgttggttgtgcgttgttcactaacaaaacgaacagacacatcgacttgatatatcttgattgtatggctgacttgcagg |
37981285 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagta |
268 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||| |||||| |||| ||||||| | ||||||| ||||||||| |||||||| | |||||| |
|
|
| T |
37981284 |
cgattgggaagtggtcatggggagggatgaccttagcttacatgtacgactatctggatgactctgttattttgaataacaaaacgatggctgggagta |
37981186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 73 - 274
Target Start/End: Original strand, 7252537 - 7252738
Alignment:
| Q |
73 |
agttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcaggcga |
172 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||| |||||||||| ||| ||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7252537 |
agtttccttctatatctcgtcggttgtgcactgtttactaacaaaatgaacagatacatcgacttgatatatcttgattgtatggcggacttgcaggcga |
7252636 |
T |
|
| Q |
173 |
ttgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagtaccac |
272 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||| |||||| ||| ||| ||||| |||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
7252637 |
ttgggaagtggtcatggggagggatgaccttagcttacatgtacgattatctgggtgattctgttattctgaataacagaacgatggctgggagtaccac |
7252736 |
T |
|
| Q |
273 |
tc |
274 |
Q |
| |
|
|| |
|
|
| T |
7252737 |
tc |
7252738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 70 - 268
Target Start/End: Complemental strand, 12025985 - 12025787
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||| |||||||||||||| | ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12025985 |
aggagtttccttctatatctcgtagattgtgcgctgttcactaacaaaacgaacagacacatcgacttgatatatcttgattgtatggcggacttgcagg |
12025886 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagta |
268 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||| | |||||| |
|
|
| T |
12025885 |
cgattggaaagtggtcatggggagggatggccttagcttacctgtacgactatctggatgattctgttattctgaataacagaacgatggctgggagta |
12025787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 70 - 268
Target Start/End: Complemental strand, 39389912 - 39389714
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39389912 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaacatacacatcgacttgatatatcttgattgtatcgcggacttgcagg |
39389813 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagta |
268 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| || ||||||| |||| ||||||||| |||||||||||||||||||| ||||| | |||||| |
|
|
| T |
39389812 |
cgattgggaagtggtcatggggagggatggccttagcgtatctgtacgactatctggatgattctgttattctgaataacagaatgatggctgggagta |
39389714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 7e-74; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 70 - 274
Target Start/End: Complemental strand, 20478490 - 20478286
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||| |||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
20478490 |
aggagtttccttctatatctcgttggtggtgcgttgttcactaacaaaacgaacagacacatcgacttgatatatcttgattgtatggctgacttgcagg |
20478391 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagtac |
269 |
Q |
| |
|
|||||| ||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| | ||||||| |||||||||||||||||| | ||||||| |
|
|
| T |
20478390 |
cgattgggaagtggtcttggggagggatggccttagcttacctgtacgactatttggatgactctgttattttgaataacagaacgatggctgggagtac |
20478291 |
T |
|
| Q |
270 |
cactc |
274 |
Q |
| |
|
|||| |
|
|
| T |
20478290 |
gactc |
20478286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 74 - 274
Target Start/End: Complemental strand, 42096885 - 42096685
Alignment:
| Q |
74 |
gttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcaggcgat |
173 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
42096885 |
gtttccttctatatctcgtcggttgcgcgttgttcactaacaaaacgaacagacacatcgacttgatatatcttgattgtatggcgaacttgcaggcgat |
42096786 |
T |
|
| Q |
174 |
tgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagtaccact |
273 |
Q |
| |
|
|| |||||| |||||| ||||||| |||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42096785 |
tgggaagtgatcatggagagggatgaccttagcttacctgtacgactatctggatgattctgttattctgaataacagaacgatggttgtgagtaccact |
42096686 |
T |
|
| Q |
274 |
c |
274 |
Q |
| |
|
| |
|
|
| T |
42096685 |
c |
42096685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 70 - 259
Target Start/End: Original strand, 41268860 - 41269049
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41268860 |
aggagttttcttctatatctcgtcggttgtgcgctgttcactaacaaaacgaacagacacatcgacttgatatatcttgattgtatggcggacttgcagg |
41268959 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatgg |
259 |
Q |
| |
|
|||||| |||||||||||||||||| || |||||||| ||| ||||| |||| ||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
41268960 |
cgattgggaagtggtcatggggaggaatggccttagcgtacttgtactactatctggatgattctgttattttgaataacagaacgatgg |
41269049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 70 - 259
Target Start/End: Complemental strand, 44117026 - 44116837
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||| | | |||||||||||| |
|
|
| T |
44117026 |
aggagtttccttctatatctcgtcggttgtgcgctgttcactaacaaaacgaacatacacatcgacttgatatatcttgattgcacggcggacttgcagg |
44116927 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatgg |
259 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||| |||||| ||| ||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
44116926 |
cgattgggaagtggtcatggggagggatgaccttagcttacttgtacgattatctggatgattctgttatcctgaataacagaacgatgg |
44116837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 70 - 250
Target Start/End: Complemental strand, 23714661 - 23714481
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||| ||||||||||| |||||| | |||||||| | |
|
|
| T |
23714661 |
aggatttttcttctatatctcgtcggtagtgcgttgttcactaacaaaacgaacagacacatcaacttaatatatcttgactgtatggcagacttgcatg |
23714562 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataaca |
250 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||| || || ||| | |||||||||||| ||||||||||| |
|
|
| T |
23714561 |
cgattgggaagtggtcatggggagggatgaccttagcttacctttatgggtatcttgatgattatgttcgtctgaataaca |
23714481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 7e-71; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 70 - 269
Target Start/End: Complemental strand, 46193420 - 46193221
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||| |||| ||||||||| |||| ||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
46193420 |
aggagtttccttctatatcttgtcggttgtgcgctgttaactaacaaatcgaacagacacatcgacttgatatatcttgattgtatggctgacttgcagg |
46193321 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagtac |
269 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||| | ||||||| |
|
|
| T |
46193320 |
cgattgggaagtggtcatggggagggatggccttagcttacctgtacgattatctggatgattctgttattctgaataacagaacgatggctgggagtac |
46193221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 58 - 268
Target Start/End: Original strand, 18241941 - 18242151
Alignment:
| Q |
58 |
gtgtggcgtgaaaggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatga |
157 |
Q |
| |
|
|||||| ||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18241941 |
gtgtggtgtgtaaagagttttcttctatatctcgtcggttgtgcgctgttcactaacaaaacgaacagacacatcgacttgatatatcttgattgtatgg |
18242040 |
T |
|
| Q |
158 |
cggacttgcaggcgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgat |
257 |
Q |
| |
|
| |||||||||| ||||| ||||||||||||||||||||| |||||||||||||| |||| |||| |||||| | ||||||| |||||||||||||||| |
|
|
| T |
18242041 |
ctgacttgcaggagattgggaagtggtcatggggagggatggccttagcttacctatacgactatccggatgactctgttattttgaataacagaacgat |
18242140 |
T |
|
| Q |
258 |
ggttaggagta |
268 |
Q |
| |
|
|| | |||||| |
|
|
| T |
18242141 |
ggctgggagta |
18242151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 70 - 274
Target Start/End: Original strand, 50913878 - 50914082
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
50913878 |
aggagtttccttctatatctcgttggttgtgcgatgttcactaacaaaacgaacagacacatcgacttgatatatcttgattgtatggctgacttgcagg |
50913977 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagtac |
269 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||| ||| ||||||| | ||||||| |||||||||||||||||| | ||||||| |
|
|
| T |
50913978 |
cgattgggaagtggtcatggggagggatgaccttagcttacctgtacgaatatctggatgactctgttattttgaataacagaacgatggctgggagtac |
50914077 |
T |
|
| Q |
270 |
cactc |
274 |
Q |
| |
|
|||| |
|
|
| T |
50914078 |
gactc |
50914082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 70 - 244
Target Start/End: Complemental strand, 42056443 - 42056269
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42056443 |
aggagttttcttctatatctcgtcggttgtacgttgttcactaacaaaacgaacagacacatcgacttgatatatcttgattgtatggcggacttgcagg |
42056344 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctga |
244 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||| ||| |||| | |||| | ||||||| ||||||||||| |
|
|
| T |
42056343 |
cgattgggaagtggtcatggggagggatgaccttagcgtacatgtaggactatctagatgattctgttattctga |
42056269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 70 - 259
Target Start/End: Original strand, 31386560 - 31386749
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||| ||||||||||||| ||| || ||||||||| |
|
|
| T |
31386560 |
aggagtttccttctatatctcgtcggtcgtgcgctgttcactaacaaaacgaacagacacatccacttgttatatcttgattgcatggcgaacttgcagg |
31386659 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatgg |
259 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||| |||||||||||| ||| |||||||||||||||| |||||||| |||||||||| |
|
|
| T |
31386660 |
cgattgggaagtggtcatggggagggatgaccttaacttacctgtacgattatctggatgattatgttatcctgaataatagaacgatgg |
31386749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 70 - 259
Target Start/End: Complemental strand, 27107129 - 27106941
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
27107129 |
aggagtttccttctatatctcgttggttgtgtgttgttcactaacaaaacaaacagacacatcgacttgatatatcttgattgcatggcggacttgcagg |
27107030 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatgg |
259 |
Q |
| |
|
|||||| |||||||||| ||||||||| ||||| ||||||||| || ||| ||||||||| | |||| ||||||||||||||||||| |
|
|
| T |
27107029 |
cgattggcaagtggtcat-gggagggatgaccttatcttacctgttcgattatctggatgattcttttatcctgaataacagaacgatgg |
27106941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 70 - 259
Target Start/End: Complemental strand, 4913042 - 4912853
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||| |||||||||||||| ||| |||||||| ||| |
|
|
| T |
4913042 |
aggagtttccttctatatctcgtcggttgtgcgctgttcactaacaaaacgaacaaacacatcgacttaatatatcttgattgcatggcggacttgtagg |
4912943 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatgg |
259 |
Q |
| |
|
|| ||| |||||||||||||| |||||| |||||| |||| |||||| ||| ||||||||| || ||| || ||||||| |||||||| |
|
|
| T |
4912942 |
cggttgggaagtggtcatgggaagggatgcccttagtttacatgtacgattatctggatgattctgatatcctaaataacataacgatgg |
4912853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0850 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: scaffold0850
Description:
Target: scaffold0850; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 70 - 274
Target Start/End: Original strand, 1184 - 1388
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || ||||||||||||| | ||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1184 |
aggagtttccttctatatctcgtcggttgtacgatgttcactaacaagaagaacagacacatcgacttgatatatcttgattgtatggcggacttgcagg |
1283 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagtac |
269 |
Q |
| |
|
| |||| ||||||||||||||||||||| ||||||||||| |||||| ||| ||||||||| |||||||||||||||||||||||||| | ||||||| |
|
|
| T |
1284 |
caattgggaagtggtcatggggagggatgaccttagcttacatgtacgattatctggatgattctgttattctgaataacagaacgatggctgggagtac |
1383 |
T |
|
| Q |
270 |
cactc |
274 |
Q |
| |
|
|||| |
|
|
| T |
1384 |
gactc |
1388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 70 - 274
Target Start/End: Original strand, 5619319 - 5619523
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| | | ||||||| |
|
|
| T |
5619319 |
aggagttttcttctatatctcgtcggttgtacgctgttcactaacaaaatgaacagacacatcgacttgatatatcttgattgtatggccggcttgcaga |
5619418 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagtac |
269 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||| |||||||||| |||| | ||||||| |||||||||||||||||||||||||| | ||||||| |
|
|
| T |
5619419 |
cgattgagaagtggtcatggggagggatgaccttagtgtacctgtacgactatctcgatgattctgttattctgaataacagaacgatggctgggagtac |
5619518 |
T |
|
| Q |
270 |
cactc |
274 |
Q |
| |
|
|||| |
|
|
| T |
5619519 |
gactc |
5619523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 74 - 191
Target Start/End: Original strand, 23058505 - 23058622
Alignment:
| Q |
74 |
gttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcaggcgat |
173 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23058505 |
gttttcttctatatctcgtcggtagtacgttgttcactaacaaaacgaacagacacatcgacttgatatatcttgattgtatggcggacttgcaggcgat |
23058604 |
T |
|
| Q |
174 |
tgtgaagtggtcatgggg |
191 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
23058605 |
tgagaagtggtcatgggg |
23058622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 19270432 - 19270392
Alignment:
| Q |
177 |
gaagtggtcatggggagggattgccttagcttacctgtacg |
217 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
19270432 |
gaagtggtcgtggggagggatgaccttagcttacctgtacg |
19270392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1868 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold1868
Description:
Target: scaffold1868; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 70 - 274
Target Start/End: Complemental strand, 738 - 534
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| |||| |
|
|
| T |
738 |
aggagattccttctatatctcgtcggttgtgcgctgttcactaacaaaacgaatagacacgtcgacttgatatatcttgattgcatggcggacttacagg |
639 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagtac |
269 |
Q |
| |
|
|||||| |||||||||||||||||| || |||||||||||| | || | ||| ||||||||||||||||| ||||||| | |||||||| | ||||||| |
|
|
| T |
638 |
cgattgggaagtggtcatggggaggtatggccttagcttacttttatgattatctggatgattatgttattttgaataaaaaaacgatggctgggagtac |
539 |
T |
|
| Q |
270 |
cactc |
274 |
Q |
| |
|
|||| |
|
|
| T |
538 |
gactc |
534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 70 - 274
Target Start/End: Complemental strand, 19317 - 19114
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
19317 |
aggagtttccttctatatctcgtcggttgtgcgatgttcactaacaaaacgaacagacacatcgacttgatatatcttgattgcatggcggacttgcagg |
19218 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagtac |
269 |
Q |
| |
|
|||||| |||||||||||||||||| || |||||||| ||||| || | ||| |||||||| ||||||| ||||||||| |||||||| | ||||||| |
|
|
| T |
19217 |
cgattgggaagtggtcatggggaggtatggccttagc-tacctttatgattatcgggatgattctgttattttgaataacaaaacgatggctgggagtac |
19119 |
T |
|
| Q |
270 |
cactc |
274 |
Q |
| |
|
|||| |
|
|
| T |
19118 |
gactc |
19114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 70 - 274
Target Start/End: Original strand, 53527 - 53730
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
53527 |
aggagtttccttctatatctcgtcggttgtgcgatgttcactaacaaaacgaacagacacatcgacttgatatatcttgattgcatggcggacttgcagg |
53626 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgttattctgaataacagaacgatggttaggagtac |
269 |
Q |
| |
|
|||||| |||||||||||||||||| || |||||||| ||||| || | ||| |||||||| ||||||| ||||||||| |||||||| | ||||||| |
|
|
| T |
53627 |
cgattgggaagtggtcatggggaggtatggccttagc-tacctttatgattatcgggatgattctgttattttgaataacaaaacgatggctgggagtac |
53725 |
T |
|
| Q |
270 |
cactc |
274 |
Q |
| |
|
|||| |
|
|
| T |
53726 |
gactc |
53730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 70 - 237
Target Start/End: Original strand, 26390 - 26557
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| || | | |
|
|
| T |
26390 |
aggagttttcttttatatcttgtcggtagtgcgttgttcactaacaaaacgaacagacacatcgacttggtatatcttgattgtatggtggacctgaatg |
26489 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggattgccttagcttacctgtacggctatttggatgattatgtt |
237 |
Q |
| |
|
| |||| |||||| |||||||||||||| ||||||||||||| || | ||| | |||||||||||| |
|
|
| T |
26490 |
caattgggaagtgatcatggggagggatgaccttagcttacctatatgattatcttgatgattatgtt |
26557 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 70 - 197
Target Start/End: Complemental strand, 63871 - 63744
Alignment:
| Q |
70 |
aggagttttcttctatatctcgtcggttgtgcgttgttcactaacaaaacgaatagacacatcgacttgatatatcttgattgtatgacggacttgcagg |
169 |
Q |
| |
|
|||||||||||||||||||| |||||| || | |||||||||||||||| ||||||||||| ||| |||||||||||||||||||| ||||||| | | |
|
|
| T |
63871 |
aggagttttcttctatatcttgtcggtagtatgctgttcactaacaaaacaaatagacacatggacgtgatatatcttgattgtatggtggacttgaatg |
63772 |
T |
|
| Q |
170 |
cgattgtgaagtggtcatggggagggat |
197 |
Q |
| |
|
||||| |||||||||||| |||||||| |
|
|
| T |
63771 |
tgattgggaagtggtcatgaggagggat |
63744 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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