View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20240_low_11 (Length: 365)
Name: NF20240_low_11
Description: NF20240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20240_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 354
Target Start/End: Original strand, 28013637 - 28013975
Alignment:
| Q |
16 |
cttctctcgagattcgttctacttttaaattttgaagtcagtgcttgaaattgagtgagaaaattcaaagaaacactaaaatgggaaacctacctcaagt |
115 |
Q |
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| T |
28013637 |
cttctctcgagattcgctctacttttaaattttgaagtcagtgcttgaaattgagtgagaaaattcaaagaaacactaaaatgggaaacctacctcaagt |
28013736 |
T |
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| Q |
116 |
actgttgtgcctactctcttcttattatctgatttagtgcaaatctctgctatacaagtgctggtaagcttcttttccctgtttcattcttgtccacttt |
215 |
Q |
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| T |
28013737 |
actgttgtgcctactctcttcttattatctgatttagtgcaaatctctgctatacaagtgctggtaagcttcttttccacgtttcattcttttccaattt |
28013836 |
T |
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| Q |
216 |
gttctttctgaaccatttctaatataatctacaatcattaatagttctcttttgtttattttttcttattctcaggagtcaggatcttaggccaactagt |
315 |
Q |
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| T |
28013837 |
gttctttctgaaccatttctaatataatctacaatcattaatagttctcttttgtttattttttcttattctcaggagtcaggatcttaggccaactaat |
28013936 |
T |
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| Q |
316 |
tggaaaaactctcctcttctatggtaattctcatctctg |
354 |
Q |
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| T |
28013937 |
tggaaaaactctcctcttctatggtaattctcatctctg |
28013975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 348
Target Start/End: Complemental strand, 54960889 - 54960855
Alignment:
| Q |
314 |
gttggaaaaactctcctcttctatggtaattctca |
348 |
Q |
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| T |
54960889 |
gttggaaaaactctcctcttctatggtaattctca |
54960855 |
T |
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