View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20240_low_14 (Length: 333)

Name: NF20240_low_14
Description: NF20240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20240_low_14
NF20240_low_14
[»] chr5 (4 HSPs)
chr5 (1-317)||(656577-656893)
chr5 (36-95)||(12842972-12843031)
chr5 (36-90)||(37022666-37022720)
chr5 (36-87)||(24092098-24092149)
[»] chr4 (5 HSPs)
chr4 (100-182)||(3896085-3896167)
chr4 (102-182)||(3144996-3145076)
chr4 (36-90)||(14027054-14027108)
chr4 (36-90)||(6746689-6746743)
chr4 (43-90)||(8724775-8724822)
[»] scaffold0015 (2 HSPs)
scaffold0015 (36-91)||(29526-29581)
scaffold0015 (36-90)||(24211-24265)
[»] chr8 (4 HSPs)
chr8 (36-91)||(86508-86563)
chr8 (36-91)||(91825-91880)
chr8 (36-91)||(19802979-19803034)
chr8 (36-90)||(29010782-29010836)
[»] chr7 (4 HSPs)
chr7 (36-91)||(11716628-11716683)
chr7 (36-90)||(13167037-13167091)
chr7 (36-89)||(11711383-11711436)
chr7 (36-91)||(13160581-13160636)
[»] chr6 (5 HSPs)
chr6 (36-91)||(16777801-16777856)
chr6 (36-91)||(32703873-32703928)
chr6 (36-90)||(16772466-16772520)
chr6 (36-90)||(32708250-32708304)
chr6 (38-90)||(26243701-26243753)
[»] chr3 (9 HSPs)
chr3 (36-91)||(4100097-4100152)
chr3 (36-91)||(5383349-5383404)
chr3 (36-91)||(6806583-6806638)
chr3 (36-90)||(5378014-5378068)
chr3 (36-90)||(13719155-13719209)
chr3 (36-91)||(13723051-13723106)
chr3 (36-91)||(4099737-4099792)
chr3 (36-90)||(2185446-2185500)
chr3 (39-88)||(23619432-23619481)
[»] chr1 (12 HSPs)
chr1 (36-91)||(2797004-2797059)
chr1 (36-91)||(14471543-14471598)
chr1 (36-91)||(14476906-14476961)
chr1 (36-91)||(23200390-23200445)
chr1 (36-90)||(2790575-2790629)
chr1 (36-90)||(23202759-23202813)
chr1 (36-90)||(39170182-39170236)
chr1 (36-87)||(42375365-42375416)
chr1 (36-91)||(21010395-21010450)
chr1 (37-90)||(394763-394816)
chr1 (37-88)||(14632655-14632706)
chr1 (55-90)||(42377395-42377430)
[»] chr2 (2 HSPs)
chr2 (36-90)||(20925392-20925446)
chr2 (105-179)||(44046416-44046490)


Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 656893 - 656577
Alignment:
Q  1 tcacttacatcatcccttacctcattgnnnnnnnncttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccatggtgtgtat 100  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  656893 tcacttacatcatcccttacctcattgaaaaaaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccatggtgtgtat 656794  T
Q  101 gtaatttgatcagcgaaagcttgctcaaagatcagaaagagtaaattatgtggatctccatccaatagaaccctggtaatactttgcaatcaatgaaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  656793 gtaatttgatcagcgaaagcttgctcaaagatcagaaagagtaaattctgtggatctccatccaacagaaccctggtaatactttgcaatcaatgaaaga 656694  T
Q  201 gttgtagaaaatttcaagtttcagctcatttgagcatatactaagtttgagttcaattattgcattcatggattttctttcacacactccatttatacta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  656693 gttgtagaaaatttcaagtttcagctcatttgagcatatactaagtttgagttcaattattgcattcatggattttctttcacacactccatttatacta 656594  T
Q  301 cagaaatgggttgtgtg 317  Q
    |||||||||||||||||    
T  656593 cagaaatgggttgtgtg 656577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 12842972 - 12843031
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccatggtg 95  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  12842972 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccaaggtg 12843031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 37022720 - 37022666
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 90  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  37022720 cttgagtttctcatttgagagttagagagtggattctctcttggtttcttagcca 37022666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 24092149 - 24092098
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgag 87  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  24092149 cttgagtttctcatttgagagttagagagtggattctctcttagtttctgag 24092098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 3896085 - 3896167
Alignment:
Q  100 tgtaatttgatcagcgaaagcttgctcaaagatcagaaagagtaaattatgtggatctccatccaatagaaccctggtaatac 182  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||| ||||||| |||||| |||||||||    
T  3896085 tgtaatttgatcagcgaaagcttgcgcaaagatcagaaagagtaaagtctgtggatctacatccaacagaaccatggtaatac 3896167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 3145076 - 3144996
Alignment:
Q  102 taatttgatcagcgaaagcttgctcaaagatcagaaagagtaaattatgtggatctccatccaatagaaccctggtaatac 182  Q
    ||||||||||||||||||||||| ||||||||||||||||| || | ||||||||| ||||||| |||||| |||||||||    
T  3145076 taatttgatcagcgaaagcttgcgcaaagatcagaaagagtgaagtctgtggatctacatccaacagaaccatggtaatac 3144996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 14027054 - 14027108
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 90  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14027054 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 14027108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 6746743 - 6746689
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 90  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6746743 cttgcgtttctcatttgagagttagagagtggattctctcttggtttctgagcca 6746689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 8724775 - 8724822
Alignment:
Q  43 ttctcatttgagagttagagagtgaattctctcttggtttctgagcca 90  Q
    ||||||||||||||||||| |||| |||||||||||| || |||||||    
T  8724775 ttctcatttgagagttagatagtggattctctcttggcttttgagcca 8724822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 29581 - 29526
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 91  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29581 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccat 29526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 24265 - 24211
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 90  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24265 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 24211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 86508 - 86563
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 91  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  86508 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccat 86563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 91825 - 91880
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 91  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  91825 cttgagtttctcatttgagagttagagagtggattctctcttggtttatgagccat 91880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 19802979 - 19803034
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 91  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  19802979 cttgagtttctaatttgagagttagagagtggattctctcttggtttctgagccat 19803034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 29010836 - 29010782
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 90  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  29010836 cttgagtttctcatttgagagttagagagtggattctctcttgatttctgagcca 29010782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 11716628 - 11716683
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 91  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11716628 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccat 11716683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 13167037 - 13167091
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 90  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13167037 cttgagtttctcatttgagagttagagagtgaattctctcttgatttctgagcca 13167091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 11711383 - 11711436
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcc 89  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11711383 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcc 11711436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 13160581 - 13160636
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 91  Q
    |||||||||||||| |||||||||||||||| |||||||||| |||||||||||||    
T  13160581 cttgagtttctcatatgagagttagagagtggattctctcttcgtttctgagccat 13160636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 16777856 - 16777801
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 91  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16777856 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccat 16777801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 32703873 - 32703928
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 91  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  32703873 cttgagtttctcatttgagagttatagagtggattctctcttggtttctgagccat 32703928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 16772520 - 16772466
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 90  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  16772520 cttgagtttctcatttgagagttagagagtggattctctattggtttctgagcca 16772466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 32708250 - 32708304
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 90  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  32708250 cttgagtttctcatttgagagttagagagtggattctctcttagtttctgagcca 32708304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 26243701 - 26243753
Alignment:
Q  38 tgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 90  Q
    |||||||||||||| ||||||||| | |||  |||||||| ||||||||||||    
T  26243701 tgagtttctcatttaagagttagaaaatgaggtctctcttagtttctgagcca 26243753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 4100097 - 4100152
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 91  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4100097 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccat 4100152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 5383404 - 5383349
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 91  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5383404 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccat 5383349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 6806638 - 6806583
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 91  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6806638 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccat 6806583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 5378068 - 5378014
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 90  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5378068 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 5378014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 13719209 - 13719155
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 90  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13719209 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 13719155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 13723106 - 13723051
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 91  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  13723106 cttgagtttctcatttgatagttagagagtggattctctcttggtttctgagccat 13723051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 4099792 - 4099737
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 91  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||    
T  4099792 cttgagtttctcttttgagagttagagagtggattctctcttggtttatgagccat 4099737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 2185446 - 2185500
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 90  Q
    |||||||||||||||||| ||||||||| || ||||||||||| |||||||||||    
T  2185446 cttgagtttctcatttgaaagttagagaatggattctctcttgatttctgagcca 2185500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 23619432 - 23619481
Alignment:
Q  39 gagtttctcatttgagagttagagagtgaattctctcttggtttctgagc 88  Q
    ||||||||||||||||||| | |||||| |||||||||||||||||||||    
T  23619432 gagtttctcatttgagagtaatagagtggattctctcttggtttctgagc 23619481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 2797059 - 2797004
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 91  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2797059 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccat 2797004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 14471598 - 14471543
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 91  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14471598 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccat 14471543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 14476961 - 14476906
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 91  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14476961 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccat 14476906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 23200390 - 23200445
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 91  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23200390 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccat 23200445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 2790629 - 2790575
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 90  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2790629 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 2790575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 23202759 - 23202813
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 90  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23202759 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 23202813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 39170182 - 39170236
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 90  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39170182 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 39170236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 42375365 - 42375416
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgag 87  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42375365 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgag 42375416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 21010450 - 21010395
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 91  Q
    |||||||||||||||| |||||||||||||| || |||||||||||||||||||||    
T  21010450 cttgagtttctcatttcagagttagagagtggatactctcttggtttctgagccat 21010395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 394816 - 394763
Alignment:
Q  37 ttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 90  Q
    ||||||||||||||||| | ||| |||||||||||||||||| |||||||||||    
T  394816 ttgagtttctcatttgaaaattacagagtgaattctctcttgatttctgagcca 394763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 14632706 - 14632655
Alignment:
Q  37 ttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagc 88  Q
    ||||||||||||||||| ||||| |||||| |||||||||| |||| |||||    
T  14632706 ttgagtttctcatttgaaagttaaagagtggattctctcttcgtttatgagc 14632655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 42377395 - 42377430
Alignment:
Q  55 agttagagagtgaattctctcttggtttctgagcca 90  Q
    |||||||||||| |||||||||||||||||||||||    
T  42377395 agttagagagtggattctctcttggtttctgagcca 42377430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 20925446 - 20925392
Alignment:
Q  36 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 90  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20925446 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 20925392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 44046416 - 44046490
Alignment:
Q  105 tttgatcagcgaaagcttgctcaaagatcagaaagagtaaattatgtggatctccatccaatagaaccctggtaa 179  Q
    ||||||||||| |||||||| || |||||||||||||| || | ||||||||| |||||||  ||||| ||||||    
T  44046416 tttgatcagcgtaagcttgcgcagagatcagaaagagtgaaatgtgtggatctacatccaactgaaccatggtaa 44046490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University