View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20240_low_17 (Length: 294)
Name: NF20240_low_17
Description: NF20240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20240_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 6871635 - 6871903
Alignment:
| Q |
11 |
cataggcatgcaagctcttgattcaggtaatgcagtggaaattataatatcttagatattaatcactatagtaggaatggcatatatttcatgctgatag |
110 |
Q |
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| T |
6871635 |
catatgcatgcaagctcttgattcaggtaatgcagtggaaattataatatcttagatattaatcactatagtaggaatggcatatatttcatgctgatag |
6871734 |
T |
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| Q |
111 |
aatcagttgctaccaatattaaaattgcaaaaccaaactggtttcaaacatatccttttcaaattagtcttttatcttcnnnnnnntgtacattttaaac |
210 |
Q |
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| T |
6871735 |
aatcagttgctaccaatattaaaattgcaaaaccaaactggtttcaaacatatccttttcaaattagtcttttatcttcaaaaaaatttacattttaaac |
6871834 |
T |
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| Q |
211 |
caacttttattcttactgtacttctgttacaaatgtgtacatgataattgaatgataaactataaaaaa |
279 |
Q |
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| T |
6871835 |
caacttttattcttactgtacttctgttacaaatgtgtacatgataattgaatgataaactataaaaaa |
6871903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 10196215 - 10196289
Alignment:
| Q |
208 |
aaccaacttttattcttactgtacttctgttacaaat--gtgtacatgataattgaatgataaactataaaaaat |
280 |
Q |
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| T |
10196215 |
aaccaactttcatttttagtccacttctgttacaaatttgtgtacatgataattgaatgatagactgtgaaaaat |
10196289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 41633460 - 41633390
Alignment:
| Q |
208 |
aaccaacttttattcttactgtacttctgttacaaat--gtgtacatgataattgaatgataaactataaa |
276 |
Q |
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| T |
41633460 |
aaccatcttttattcttagtcgacttctgttataaatttgtgtacatgatcattgaatgatatactataaa |
41633390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 8488165 - 8488254
Alignment:
| Q |
11 |
cataggcatgcaagctcttgattcaggtaatgcagtggaaattataatatctta---gatattaatcactatagtaggaatggcatatat |
97 |
Q |
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| T |
8488165 |
catatgcatgcaaactcttaattcaggtaatgtgttggaaattataatatcttagctgctaattattactatagtaggaatagcatatat |
8488254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 1036039 - 1036097
Alignment:
| Q |
208 |
aaccaacttttattcttactgtacttctgttacaaatgtgtacatgataattgaatgat |
266 |
Q |
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| T |
1036039 |
aaccaactttcatttttagtccacttctgttacaactgtgtacatgatcattgaatgat |
1036097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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